如果可以,请相信我:癌症药物敏感性预测机器学习方法的可靠性和可解释性调查。

IF 6.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Briefings in bioinformatics Pub Date : 2024-07-25 DOI:10.1093/bib/bbae379
Kerstin Lenhof, Lea Eckhart, Lisa-Marie Rolli, Hans-Peter Lenhof
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引用次数: 0

摘要

随着人工智能(AI)系统数量的不断增加,降低其使用风险已成为最紧迫的科学和社会问题之一。为此,欧盟通过了《欧盟人工智能法案》,提出了可归纳为 "可信赖性 "的解决策略。在抗癌药物敏感性预测方面,机器学习(ML)方法被开发应用于医疗决策支持系统,而这对可信度的要求极高。本综述概述了用于抗癌药物敏感性预测的机器学习方法,包括对四个主要机器学习领域(监督学习、无监督学习、半监督学习和强化学习)的简要介绍。特别是,我们探讨了在过去十年中,抗癌药物敏感性预测方法在多大程度上融入了可信度相关特性,更具体地说,就是可解释性和可靠性。我们总共分析了 36 篇关于抗癌药物敏感性预测方法的论文。结果表明,迄今为止,可靠性的需求几乎没有得到解决。另一方面,在模型开发过程中经常会考虑到可解释性。然而,这一概念的使用比较直观,缺乏明确的定义。因此,我们为可解释性提出了一个易于扩展的分类法,统一了该领域内明确或隐含的所有普遍内涵。
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Trust me if you can: a survey on reliability and interpretability of machine learning approaches for drug sensitivity prediction in cancer.

With the ever-increasing number of artificial intelligence (AI) systems, mitigating risks associated with their use has become one of the most urgent scientific and societal issues. To this end, the European Union passed the EU AI Act, proposing solution strategies that can be summarized under the umbrella term trustworthiness. In anti-cancer drug sensitivity prediction, machine learning (ML) methods are developed for application in medical decision support systems, which require an extraordinary level of trustworthiness. This review offers an overview of the ML landscape of methods for anti-cancer drug sensitivity prediction, including a brief introduction to the four major ML realms (supervised, unsupervised, semi-supervised, and reinforcement learning). In particular, we address the question to what extent trustworthiness-related properties, more specifically, interpretability and reliability, have been incorporated into anti-cancer drug sensitivity prediction methods over the previous decade. In total, we analyzed 36 papers with approaches for anti-cancer drug sensitivity prediction. Our results indicate that the need for reliability has hardly been addressed so far. Interpretability, on the other hand, has often been considered for model development. However, the concept is rather used intuitively, lacking clear definitions. Thus, we propose an easily extensible taxonomy for interpretability, unifying all prevalent connotations explicitly or implicitly used within the field.

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来源期刊
Briefings in bioinformatics
Briefings in bioinformatics 生物-生化研究方法
CiteScore
13.20
自引率
13.70%
发文量
549
审稿时长
6 months
期刊介绍: Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data. The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.
期刊最新文献
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