组织病理学 WSI 分类中用于可靠数据增强的自监督表征分布学习

Kunming Tang, Zhiguo Jiang, Kun Wu, Jun Shi, Fengying Xie, Wei Wang, Haibo Wu, Yushan Zheng
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引用次数: 0

摘要

基于多实例学习(MIL)的整张幻灯片图像(WSI)分类通常是通过预先训练的补丁编码器从 WSI 提取的补丁表示进行的。分类的性能取决于补丁级表示学习和 MIL 分类器训练。大多数 MIL 方法利用在 ImageNet 上预先训练的冻结模型或在组织病理学图像数据集上通过自监督学习训练的模型来提取补丁图像表征,然后出于效率考虑在 MIL 分类器的训练中固定这些表征。然而,表征的不变性无法满足训练鲁棒性 MIL 分类器的多样性要求,这大大限制了 WSI 分类的性能。在本文中,我们提出了一种用于斑块级表征学习的自监督表征分布学习框架(SSRDL),采用在线表征采样策略(ORS)进行斑块特征提取和 WSI 级数据增强。在三个 MIL 框架下的三个数据集上对所提出的方法进行了评估。实验结果表明,所提出的方法在组织病理学图像表征学习和数据增强方面取得了最佳性能,在不同的 WSI 分类框架下优于最先进的方法。代码见 https://github.com/lazytkm/SSRDL。
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Self-Supervised Representation Distribution Learning for Reliable Data Augmentation in Histopathology WSI Classification.

Multiple instance learning (MIL) based whole slide image (WSI) classification is often carried out on the representations of patches extracted from WSI with a pre-trained patch encoder. The performance of classification relies on both patch-level representation learning and MIL classifier training. Most MIL methods utilize a frozen model pre-trained on ImageNet or a model trained with self-supervised learning on histopathology image dataset to extract patch image representations and then fix these representations in the training of the MIL classifiers for efficiency consideration. However, the invariance of representations cannot meet the diversity requirement for training a robust MIL classifier, which has significantly limited the performance of the WSI classification. In this paper, we propose a Self-Supervised Representation Distribution Learning framework (SSRDL) for patch-level representation learning with an online representation sampling strategy (ORS) for both patch feature extraction and WSI-level data augmentation. The proposed method was evaluated on three datasets under three MIL frameworks. The experimental results have demonstrated that the proposed method achieves the best performance in histopathology image representation learning and data augmentation and outperforms state-of-the-art methods under different WSI classification frameworks. The code is available at https://github.com/lazytkm/SSRDL.

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