通过半理性诱变提高紫杉属植物苯丙氨酸氨基转化酶在肉桂酸盐生物催化氨基化中的区域选择性

IF 4.3 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Frontiers in Bioengineering and Biotechnology Pub Date : 2024-08-22 eCollection Date: 2024-01-01 DOI:10.3389/fbioe.2024.1417962
Tao Tang, Miao Wang, Yunyun Zhang, Yijun Chen
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引用次数: 0

摘要

底物在结合袋中的占有率最终决定了酶催化的结果。先前对来自紫杉(Taxus chinensis)的苯丙氨酸氨基转化酶(TcPAM)进行的工程设计和底物范围研究,为制备α-和β-苯丙氨酸及其衍生物提供了有关区域选择性和生物催化潜力的宝贵知识。然而,TcPAM 在对肉桂酸盐进行胺化时所具有的明显不同的区域选择性尚未得到充分了解。在本研究中,我们采用重构方法改变了 TcPAM 的整个结合口袋,以探究影响区域选择性的因素,结果变体 C107S/Q319M/I431V 对反式肉桂酸的 β/α 产物比提高了 25.5 倍。此外,当使用取代的肉桂酸盐作为底物时,区域选择性与结合口袋中的各种变化密切相关,突变体 L104A 和 Q319M 在制备规模上分别验证了增值的 2-Cl-α-Phe (100% α-选择性)和 4-CH3-β-Phe (98% β-选择性),体现了我们的工程策略的应用可行性。本研究揭示了影响区域选择性的芳香结合和羧酸结合之间的协同联系,为了解 TcPAM 所具有的区域选择性的决定因素提供了新的视角,并为其在苯丙氨酸衍生物上的生物催化应用铺平了道路。
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Improving regioselectivity of phenylalanine aminomutase from Taxus chinensis by semi-rational mutagenesis for the biocatalytic amination of cinnamates.

The occupancy of the binding pocket by the substrate ultimately determines the outcome of enzyme catalysis. Previous engineering and substrate scope of phenylalanine aminomutase from Taxus chinensis (TcPAM) has generated valuable knowledge about the regioselectivity with biocatalytic potentials for the preparation of α- and β-phenylalanine and their derivatives. However, the significantly different regioselectivity during the amination of cinnamates by TcPAM is not fully understood. In this study, we take a reconstruction approach to change the whole binding pocket of TcPAM for probing the factors affecting the regioselectivity, resulting in variant C107S/Q319M/I431V reaching a 25.5-fold enhancement of the β/α product ratio toward trans-cinnamate acid. Furthermore, when substituted cinnamates were used as substrates, the regioselectivity was strongly correlated with various changes in the binding pocket, and value-added 2-Cl-α-Phe (100% α-selectivity) and 4-CH3-β-Phe (98% β-selectivity) were individually verified by the mutants L104A and Q319M at a preparative scale, exemplifying the application feasibility of our engineering strategy. The present study uncovered the cooperative connection between aromatic binding and carboxylate binding to affect the regioselectivity, which provides new insights into the determinants of the regioselectivity possessed by TcPAM and paves the way for its biocatalytic applications on phenylalanine derivatives.

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来源期刊
Frontiers in Bioengineering and Biotechnology
Frontiers in Bioengineering and Biotechnology Chemical Engineering-Bioengineering
CiteScore
8.30
自引率
5.30%
发文量
2270
审稿时长
12 weeks
期刊介绍: The translation of new discoveries in medicine to clinical routine has never been easy. During the second half of the last century, thanks to the progress in chemistry, biochemistry and pharmacology, we have seen the development and the application of a large number of drugs and devices aimed at the treatment of symptoms, blocking unwanted pathways and, in the case of infectious diseases, fighting the micro-organisms responsible. However, we are facing, today, a dramatic change in the therapeutic approach to pathologies and diseases. Indeed, the challenge of the present and the next decade is to fully restore the physiological status of the diseased organism and to completely regenerate tissue and organs when they are so seriously affected that treatments cannot be limited to the repression of symptoms or to the repair of damage. This is being made possible thanks to the major developments made in basic cell and molecular biology, including stem cell science, growth factor delivery, gene isolation and transfection, the advances in bioengineering and nanotechnology, including development of new biomaterials, biofabrication technologies and use of bioreactors, and the big improvements in diagnostic tools and imaging of cells, tissues and organs. In today`s world, an enhancement of communication between multidisciplinary experts, together with the promotion of joint projects and close collaborations among scientists, engineers, industry people, regulatory agencies and physicians are absolute requirements for the success of any attempt to develop and clinically apply a new biological therapy or an innovative device involving the collective use of biomaterials, cells and/or bioactive molecules. “Frontiers in Bioengineering and Biotechnology” aspires to be a forum for all people involved in the process by bridging the gap too often existing between a discovery in the basic sciences and its clinical application.
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