Mei Xu, Jian Zhang, Jianyu Song, Zifang Zhang, Junjie Wu
{"title":"Triplophysa grahami Regan 1906（鲤形目：Nemacheilidae）的完整线粒体基因组及系统发育分析。","authors":"Mei Xu, Jian Zhang, Jianyu Song, Zifang Zhang, Junjie Wu","doi":"10.1080/23802359.2024.2399926","DOIUrl":null,"url":null,"abstract":"<p><p><i>Triplophysa grahami</i> Regan 1906 is a member of the family Nemacheilidae, Cypriniformes, and native loach in Yunnan. In this study, the complete mitochondrial genome (mitogenome) of <i>T. grahami</i> Regan 1906 was firstly reported and analyzed. The mitogenome of <i>T. grahami</i> Regan 1906 is 16,566 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region (D-loop). The arrangement and orientation of protein coding genes and RNAs in <i>T. grahami</i> Regan 1906 are identical to other species of Nemacheilidae. The base composition of <i>T. grahami</i> Regan 1906 mitogenome was 29.25% A, 28.55% T, 25.03% C, and 17.17% G. The phylogenetic analysis based on the mitogenome showed that <i>T. grahami</i> Regan 1906 belongs to the clade of genus <i>Triplophysa</i> and the monophyly of <i>Triplophysa</i> is identified. This study contributed valuable genetic data for <i>T. grahami</i> Regan 1906 and explored the phylogenetic relationships in Nemacheilidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378653/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete mitochondrial genome of <i>Triplophysa grahami</i> Regan 1906 (Cypriniformes: Nemacheilidae) and phylogenetic analysis.\",\"authors\":\"Mei Xu, Jian Zhang, Jianyu Song, Zifang Zhang, Junjie Wu\",\"doi\":\"10.1080/23802359.2024.2399926\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Triplophysa grahami</i> Regan 1906 is a member of the family Nemacheilidae, Cypriniformes, and native loach in Yunnan. In this study, the complete mitochondrial genome (mitogenome) of <i>T. grahami</i> Regan 1906 was firstly reported and analyzed. The mitogenome of <i>T. grahami</i> Regan 1906 is 16,566 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region (D-loop). The arrangement and orientation of protein coding genes and RNAs in <i>T. grahami</i> Regan 1906 are identical to other species of Nemacheilidae. The base composition of <i>T. grahami</i> Regan 1906 mitogenome was 29.25% A, 28.55% T, 25.03% C, and 17.17% G. The phylogenetic analysis based on the mitogenome showed that <i>T. grahami</i> Regan 1906 belongs to the clade of genus <i>Triplophysa</i> and the monophyly of <i>Triplophysa</i> is identified. This study contributed valuable genetic data for <i>T. grahami</i> Regan 1906 and explored the phylogenetic relationships in Nemacheilidae.</p>\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-09-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378653/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2399926\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2399926","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
The complete mitochondrial genome of Triplophysa grahami Regan 1906 (Cypriniformes: Nemacheilidae) and phylogenetic analysis.
Triplophysa grahami Regan 1906 is a member of the family Nemacheilidae, Cypriniformes, and native loach in Yunnan. In this study, the complete mitochondrial genome (mitogenome) of T. grahami Regan 1906 was firstly reported and analyzed. The mitogenome of T. grahami Regan 1906 is 16,566 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region (D-loop). The arrangement and orientation of protein coding genes and RNAs in T. grahami Regan 1906 are identical to other species of Nemacheilidae. The base composition of T. grahami Regan 1906 mitogenome was 29.25% A, 28.55% T, 25.03% C, and 17.17% G. The phylogenetic analysis based on the mitogenome showed that T. grahami Regan 1906 belongs to the clade of genus Triplophysa and the monophyly of Triplophysa is identified. This study contributed valuable genetic data for T. grahami Regan 1906 and explored the phylogenetic relationships in Nemacheilidae.
期刊介绍：
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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