酸诱导含咪唑酰胺的螺旋折叠体的构象转换

IF 3.3 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Bulletin of the Chemical Society of Japan Pub Date : 2024-09-11 DOI:10.1093/bulcsj/uoae094
Sakiko Kimura, Fumi Takeda, Ayano Ikeda, Asuka Tanimoto, Kosuke Katagiri, Masatoshi Kawahata, Yusuke Okada, Nagao Kobayashi, Hiroyuki Kagechika, Aya Tanatani
{"title":"酸诱导含咪唑酰胺的螺旋折叠体的构象转换","authors":"Sakiko Kimura, Fumi Takeda, Ayano Ikeda, Asuka Tanimoto, Kosuke Katagiri, Masatoshi Kawahata, Yusuke Okada, Nagao Kobayashi, Hiroyuki Kagechika, Aya Tanatani","doi":"10.1093/bulcsj/uoae094","DOIUrl":null,"url":null,"abstract":"N-Alkylated oligo- and poly(p-benzamide)s exist as dynamic helical structures with all-cis amide conformation. Imidazole N-alkylated amides also show cis conformational preference, but their major conformer is changed from cis to trans by addition of acid. Here, based on those findings, we designed and synthesized aromatic triamides 3 and hexaamides 4 containing an imidazole ring as candidate foldamers anticipated to exhibit acid-induced conformational change. X-Ray structure analysis of oligomer 3c showed that it takes all-cis conformation in the crystal. In solution, all the oligoamides examined existed as an equilibrium mixture of four conformers, among which the major conformer was the folded all-cis structure as judged from the low-temperature 1H NMR spectra. When trifluoroacetic acid-d was added to a solution of the oligoamides in methylene chloride-d2, only two conformers were observed in the low-temperature 1H NMR spectra, and the major conformer was the (trans, cis) form with respect to the amide bonds of the imidazole at the 4 and 2 positions. Experimental and theoretical analysis of the CD spectra indicated that the conformation of hexaamides 4 changes upon addition of acid. Our results suggest that N-alkylated imidazoleamide can serve as a key structural motif for the construction of foldamers with acid-switchable conformation.","PeriodicalId":9511,"journal":{"name":"Bulletin of the Chemical Society of Japan","volume":null,"pages":null},"PeriodicalIF":3.3000,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Acid-induced Conformational Switching of Helical Foldamers Containing Imidazole Amide\",\"authors\":\"Sakiko Kimura, Fumi Takeda, Ayano Ikeda, Asuka Tanimoto, Kosuke Katagiri, Masatoshi Kawahata, Yusuke Okada, Nagao Kobayashi, Hiroyuki Kagechika, Aya Tanatani\",\"doi\":\"10.1093/bulcsj/uoae094\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"N-Alkylated oligo- and poly(p-benzamide)s exist as dynamic helical structures with all-cis amide conformation. Imidazole N-alkylated amides also show cis conformational preference, but their major conformer is changed from cis to trans by addition of acid. Here, based on those findings, we designed and synthesized aromatic triamides 3 and hexaamides 4 containing an imidazole ring as candidate foldamers anticipated to exhibit acid-induced conformational change. X-Ray structure analysis of oligomer 3c showed that it takes all-cis conformation in the crystal. In solution, all the oligoamides examined existed as an equilibrium mixture of four conformers, among which the major conformer was the folded all-cis structure as judged from the low-temperature 1H NMR spectra. When trifluoroacetic acid-d was added to a solution of the oligoamides in methylene chloride-d2, only two conformers were observed in the low-temperature 1H NMR spectra, and the major conformer was the (trans, cis) form with respect to the amide bonds of the imidazole at the 4 and 2 positions. Experimental and theoretical analysis of the CD spectra indicated that the conformation of hexaamides 4 changes upon addition of acid. Our results suggest that N-alkylated imidazoleamide can serve as a key structural motif for the construction of foldamers with acid-switchable conformation.\",\"PeriodicalId\":9511,\"journal\":{\"name\":\"Bulletin of the Chemical Society of Japan\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-09-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bulletin of the Chemical Society of Japan\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1093/bulcsj/uoae094\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bulletin of the Chemical Society of Japan","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1093/bulcsj/uoae094","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

N- 烷基低聚物和聚对苯甲酰胺以全顺式酰胺构象的动态螺旋结构存在。咪唑 N-烷基化酰胺也表现出顺式构象偏好,但加入酸后其主要构象从顺式变为反式。在此,我们根据这些发现设计并合成了含有咪唑环的芳香族三酰胺 3 和六酰胺 4,作为预计会出现酸诱导构象变化的候选折叠体。低聚物 3c 的 X 射线结构分析表明,它在晶体中呈全顺式构象。在溶液中,所有受检的低聚酰胺都以四种构象的平衡混合物形式存在,根据低温 1H NMR 光谱判断,其中主要的构象是全顺式折叠结构。当向低聚酰胺在二氯甲烷-d2 中的溶液中加入三氟乙酸-d 时,在低温 1H NMR 光谱中只观察到两种构象,主要构象是咪唑的酰胺键位于 4 和 2 位置的(反式、顺式)形式。对 CD 光谱的实验和理论分析表明,六酰胺 4 的构象在加入酸后发生了变化。我们的研究结果表明,N-烷基化咪唑酰胺可以作为一种关键的结构基团,用于构建具有酸可转换构象的折叠体。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Acid-induced Conformational Switching of Helical Foldamers Containing Imidazole Amide
N-Alkylated oligo- and poly(p-benzamide)s exist as dynamic helical structures with all-cis amide conformation. Imidazole N-alkylated amides also show cis conformational preference, but their major conformer is changed from cis to trans by addition of acid. Here, based on those findings, we designed and synthesized aromatic triamides 3 and hexaamides 4 containing an imidazole ring as candidate foldamers anticipated to exhibit acid-induced conformational change. X-Ray structure analysis of oligomer 3c showed that it takes all-cis conformation in the crystal. In solution, all the oligoamides examined existed as an equilibrium mixture of four conformers, among which the major conformer was the folded all-cis structure as judged from the low-temperature 1H NMR spectra. When trifluoroacetic acid-d was added to a solution of the oligoamides in methylene chloride-d2, only two conformers were observed in the low-temperature 1H NMR spectra, and the major conformer was the (trans, cis) form with respect to the amide bonds of the imidazole at the 4 and 2 positions. Experimental and theoretical analysis of the CD spectra indicated that the conformation of hexaamides 4 changes upon addition of acid. Our results suggest that N-alkylated imidazoleamide can serve as a key structural motif for the construction of foldamers with acid-switchable conformation.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
6.40
自引率
5.00%
发文量
194
审稿时长
3-8 weeks
期刊介绍: The Bulletin of the Chemical Society of Japan (BCSJ) is devoted to the publication of scientific research papers in the fields of Theoretical and Physical Chemistry, Analytical and Inorganic Chemistry, Organic and Biological Chemistry, and Applied and Materials Chemistry. BCSJ appears as a monthly journal online and in advance with three kinds of papers (Accounts, Articles, and Short Articles) describing original research. The purpose of BCSJ is to select and publish the most important papers with the broadest significance to the chemistry community in general. The Chemical Society of Japan hopes all visitors will notice the usefulness of our journal and the abundance of topics, and welcomes more submissions from scientists all over the world.
期刊最新文献
Highly efficient direct air capture using solid–liquid phase separation in aqueous diamine solution as sorbent Effect of the Supported Metal Species on Soot Oxidation over PGM/CeO2–ZrO2 Acid-induced Conformational Switching of Helical Foldamers Containing Imidazole Amide Design of Cyborg Proteins by Loop Region Replacement with Oligo(ethylene glycol): Exploring Suitable Mutations for Cyborg Protein Construction Using Machine Learning Purification and Tailored Functionalities in Detonation Nanodiamond
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1