Will J. Nash, Angela Man, Seanna McTaggart, Kendall Baker, Tom Barker, Leah Catchpole, Alex Durrant, Karim Gharbi, Naomi Irish, Gemy Kaithakottil, Debby Ku, Aaliyah Providence, Felix Shaw, David Swarbreck, Chris Watkins, Ann M. McCartney, Giulio Formenti, Alice Mouton, Noel Vella, Björn M. von Reumont, Adriana Vella, Wilfried Haerty
{"title":"紫木匠蜂（Xylocopa violacea，林尼厄斯，1785 年）的基因组序列：一个正在扩大范围的膜翅目物种","authors":"Will J. Nash, Angela Man, Seanna McTaggart, Kendall Baker, Tom Barker, Leah Catchpole, Alex Durrant, Karim Gharbi, Naomi Irish, Gemy Kaithakottil, Debby Ku, Aaliyah Providence, Felix Shaw, David Swarbreck, Chris Watkins, Ann M. McCartney, Giulio Formenti, Alice Mouton, Noel Vella, Björn M. von Reumont, Adriana Vella, Wilfried Haerty","doi":"10.1038/s41437-024-00720-2","DOIUrl":null,"url":null,"abstract":"We present a reference genome assembly from an individual male Violet Carpenter Bee (Xylocopa violacea, Linnaeus 1758). The assembly is 1.02 gigabases in span. 48% of the assembly is scaffolded into 17 pseudo-chromosomal units. The mitochondrial genome has also been assembled and is 21.8 kilobases in length. The genome is highly repetitive, likely representing a highly heterochromatic architecture expected of bees from the genus Xylocopa. We also use an evidence-based methodology to annotate 10,152 high confidence coding genes. This genome was sequenced as part of the pilot project of the European Reference Genome Atlas (ERGA) and represents an important addition to the genomic resources available for Hymenoptera.","PeriodicalId":12991,"journal":{"name":"Heredity","volume":"133 6","pages":"381-387"},"PeriodicalIF":3.1000,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.com/articles/s41437-024-00720-2.pdf","citationCount":"0","resultStr":"{\"title\":\"The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion\",\"authors\":\"Will J. Nash, Angela Man, Seanna McTaggart, Kendall Baker, Tom Barker, Leah Catchpole, Alex Durrant, Karim Gharbi, Naomi Irish, Gemy Kaithakottil, Debby Ku, Aaliyah Providence, Felix Shaw, David Swarbreck, Chris Watkins, Ann M. McCartney, Giulio Formenti, Alice Mouton, Noel Vella, Björn M. von Reumont, Adriana Vella, Wilfried Haerty\",\"doi\":\"10.1038/s41437-024-00720-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We present a reference genome assembly from an individual male Violet Carpenter Bee (Xylocopa violacea, Linnaeus 1758). The assembly is 1.02 gigabases in span. 48% of the assembly is scaffolded into 17 pseudo-chromosomal units. The mitochondrial genome has also been assembled and is 21.8 kilobases in length. The genome is highly repetitive, likely representing a highly heterochromatic architecture expected of bees from the genus Xylocopa. We also use an evidence-based methodology to annotate 10,152 high confidence coding genes. This genome was sequenced as part of the pilot project of the European Reference Genome Atlas (ERGA) and represents an important addition to the genomic resources available for Hymenoptera.\",\"PeriodicalId\":12991,\"journal\":{\"name\":\"Heredity\",\"volume\":\"133 6\",\"pages\":\"381-387\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2024-09-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.nature.com/articles/s41437-024-00720-2.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Heredity\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.nature.com/articles/s41437-024-00720-2\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Heredity","FirstCategoryId":"99","ListUrlMain":"https://www.nature.com/articles/s41437-024-00720-2","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion
We present a reference genome assembly from an individual male Violet Carpenter Bee (Xylocopa violacea, Linnaeus 1758). The assembly is 1.02 gigabases in span. 48% of the assembly is scaffolded into 17 pseudo-chromosomal units. The mitochondrial genome has also been assembled and is 21.8 kilobases in length. The genome is highly repetitive, likely representing a highly heterochromatic architecture expected of bees from the genus Xylocopa. We also use an evidence-based methodology to annotate 10,152 high confidence coding genes. This genome was sequenced as part of the pilot project of the European Reference Genome Atlas (ERGA) and represents an important addition to the genomic resources available for Hymenoptera.
期刊介绍：
Heredity is the official journal of the Genetics Society. It covers a broad range of topics within the field of genetics and therefore papers must address conceptual or applied issues of interest to the journal''s wide readership
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