Dongia sedimenti sp.

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS ACS Applied Bio Materials Pub Date : 2024-09-01 DOI:10.1099/ijsem.0.006532
Xueting Jiang, Luyao Ruan, Ningning Wu, Dongmei Mao, Jian He, Shimei Wang, Jiangdong Jiang, Qirong Shen
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引用次数: 0

摘要

从中国江苏省无锡市的河流沉积物中分离出一株革兰氏染色阴性、无芽孢、严格需氧的细菌,命名为 R-7T。细胞(1.6-3.8 微米长,0.6-0.8 微米宽)呈微弯曲至直棒状,通过极性鞭毛运动。该菌株在 Reasoner's 2A 培养基上生长最佳,培养基温度为 30 °C,pH 值为 7.0,氯化钠含量为 1.0%(重量/体积)。菌株 R-7T 与 Dongia mobilis CGMCC 1.7660T (95.4%)、D. rigui 04SU4-PT (94.6%)和 D. soli D78T (93.8%)的 16S rRNA 基因序列相似度最高。基于基因组和 16S rRNA 基因序列的系统发生树显示,菌株 R-7T 被归入东亚属。R-7T 与东亚属三个模式菌株的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 73.4%、72.8% 和 72.4%,以及 19.5%、19.0% 和 18.7%。主要的呼吸醌为 Q-10。主要极性脂类为磷脂酰乙醇胺、磷脂酰甘油、3 种不明氨基脂类、2 种不明氨基磷脂和 9 种不明极性脂类。主要的细胞脂肪酸(占总数的 5%以上)是环-C19 :0 ω8c、C16 :0 和 C16 :0 和 C16 : 0 2-OH。DNA 的 G+C 含量为 65.5 摩尔%。根据本研究提供的证据,菌株R-7T代表了东亚属的一个新物种,因此建议将其命名为Dongia sedimenti sp.nov.,以菌株R-7T(=KCTC 8082T=MCCC 1K08805T)为模式菌株。
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Dongia sedimenti sp. nov., isolated from river sediment.

A Gram-stain-negative, non-spore-forming and strictly aerobic bacterial strain, designated R-7T, was isolated from river sediment in Wuxi, Jiangsu, PR China. Cells (1.6-3.8 µm long and 0.6-0.8 µm wide) were slightly curved to straight rods and motile by means of a polar flagellum. The strain grew optimally on Reasoner's 2A medium at 30 °C, pH 7.0 and with 1.0% (w/v) NaCl. Strain R-7T exhibited closest 16S rRNA gene sequence similarities to Dongia mobilis CGMCC 1.7660T (95.4%), D. rigui 04SU4-PT (94.6%) and D. soli D78T (93.8%). The phylogenetic trees based on genomic and 16S rRNA gene sequences showed that strain R-7T was clustered in the genus Dongia. The obtained average nucleotide identity and digital DNA-DNA hybridization values between R-7T and the three type strains of the genus Dongia were 73.4, 72.8 and 72.4% and 19.5, 19.0 and 18.7%, respectively. The major respiratory quinone was Q-10. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, three unidentified aminolipids, two unidentified aminophospholipids and nine unidentified polar lipids. The major cellular fatty acids (>5% of the total) were cyclo-C19 : 0  ω8c, C16 : 0 and C16 : 0 2-OH. The DNA G+C content was 65.5 mol%. On the basis of the evidence presented in this study, strain R-7T represents a novel species of the genus Dongia, for which the name Dongia sedimenti sp. nov. is proposed, with strain R-7T (=KCTC 8082T=MCCC 1K08805T) as the type strain.

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来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
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