{"title":"Garcinia esculenta Y. H. Li 的完整叶绿体基因组和系统发育分析。1981 (Clusiaceae).","authors":"Fengzhi Shi, Siying Li, Min Fan, Shuang Wang","doi":"10.1080/23802359.2024.2412244","DOIUrl":null,"url":null,"abstract":"<p><p><i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae) is an endemic tree species in China, primarily found in western and northwestern Yunnan Province. In this research, the complete chloroplast genome of <i>G. esculenta</i> was sequenced using the Illumina NovaSeq6000 platform. The result showed that the length of the complete chloroplast genome was 155,853 bp, which was composed of a large single-copy region (LSC) of 84,534 bp, a small single-copy region (SSC) of 17,175 bp, and a pair of inverted repeat (IR) regions of 27,072 bp. The overall GC content was 36.1%. The complete chloroplast genome encompassed 128 genes, comprising 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of the complete chloroplast genome sequences of 22 species revealed that <i>G. esculenta</i> is most closely related to <i>G. oblongifolia</i>.</p>","PeriodicalId":0,"journal":{"name":"","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11459857/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete chloroplast genome and phylogenetic analysis of <i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae).\",\"authors\":\"Fengzhi Shi, Siying Li, Min Fan, Shuang Wang\",\"doi\":\"10.1080/23802359.2024.2412244\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Garcinia esculenta</i> Y. H. Li. 1981 (Clusiaceae) is an endemic tree species in China, primarily found in western and northwestern Yunnan Province. In this research, the complete chloroplast genome of <i>G. esculenta</i> was sequenced using the Illumina NovaSeq6000 platform. The result showed that the length of the complete chloroplast genome was 155,853 bp, which was composed of a large single-copy region (LSC) of 84,534 bp, a small single-copy region (SSC) of 17,175 bp, and a pair of inverted repeat (IR) regions of 27,072 bp. The overall GC content was 36.1%. The complete chloroplast genome encompassed 128 genes, comprising 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of the complete chloroplast genome sequences of 22 species revealed that <i>G. esculenta</i> is most closely related to <i>G. oblongifolia</i>.</p>\",\"PeriodicalId\":0,\"journal\":{\"name\":\"\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0,\"publicationDate\":\"2024-10-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11459857/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2412244\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2412244","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
Garcinia esculenta Y. H. Li.1981）是中国特有的树种，主要分布于云南省西部和西北部。本研究利用 Illumina NovaSeq6000 平台对 G. esculenta 的叶绿体基因组进行了测序。结果表明，完整叶绿体基因组的长度为155 853 bp，由84 534 bp的大单拷贝区（LSC）、17 175 bp的小单拷贝区（SSC）和27 072 bp的一对倒位重复区（IR）组成。总的 GC 含量为 36.1%。完整的叶绿体基因组包含 128 个基因，包括 83 个蛋白质编码基因、37 个 tRNA 基因和 8 个 rRNA 基因。对 22 个物种的完整叶绿体基因组序列进行的系统进化分析表明，G. esculenta 与 G. oblongifolia 的亲缘关系最为密切。
The complete chloroplast genome and phylogenetic analysis of Garcinia esculenta Y. H. Li. 1981 (Clusiaceae).
Garcinia esculenta Y. H. Li. 1981 (Clusiaceae) is an endemic tree species in China, primarily found in western and northwestern Yunnan Province. In this research, the complete chloroplast genome of G. esculenta was sequenced using the Illumina NovaSeq6000 platform. The result showed that the length of the complete chloroplast genome was 155,853 bp, which was composed of a large single-copy region (LSC) of 84,534 bp, a small single-copy region (SSC) of 17,175 bp, and a pair of inverted repeat (IR) regions of 27,072 bp. The overall GC content was 36.1%. The complete chloroplast genome encompassed 128 genes, comprising 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of the complete chloroplast genome sequences of 22 species revealed that G. esculenta is most closely related to G. oblongifolia.
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