有效、经济地消除新发传染病的最佳空间控制措施。

IF 3.8 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS PLoS Computational Biology Pub Date : 2024-10-07 eCollection Date: 2024-10-01 DOI:10.1371/journal.pcbi.1012498
Fan Xia, Yanni Xiao, Junling Ma
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引用次数: 0

摘要

在传染病爆发的早期阶段,非药物干预措施(NPIs)可有效减轻感染。然而,这些措施会产生巨大的经济和生活成本。为此,我们开发了一个优化控制框架,旨在确定既能最大限度降低此类成本,又能确保全面控制新发传染病跨区域爆发的策略。我们的方法采用空间 SEIR 模型,对流行过程进行干预,并将人口流动纳入取决于国内生产总值(GDP)和地理距离的重力模型中。我们运用这一框架,为 2021 年 12 月至 2022 年 1 月期间中国陕西省西安市由三角洲变种引起的 COVID-19 疫情确定了最佳控制策略。通过对西安市各区的每日病例数据进行拟合,对模型进行了参数化。我们的研究结果表明,基本繁殖数量、潜伏期或传染期的增加会导致疫情爆发时间延长和最终规模扩大。这表明,传播性更强的疾病更具挑战性,控制成本也更高,因此政府必须快速识别病例并实施控制策略。事实上,我们确定的最佳控制策略表明,一旦认为有必要,就应尽快实施成本更高的控制措施。我们的研究结果表明,最佳控制制度具有空间、经济和人口异质性。人口较多、经济发达的地区需要强有力的定期监测机制,以确保及时发现和控制输入性感染。国内生产总值较高的地区往往会发生更大规模的流行病,因此需要更高的控制成本。值得注意的是,与西安疫情的实际支出相比,我们提出的最优策略大大降低了成本。
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The optimal spatially-dependent control measures to effectively and economically eliminate emerging infectious diseases.

Non-pharmaceutical interventions (NPIs) are effective in mitigating infections during the early stages of an infectious disease outbreak. However, these measures incur significant economic and livelihood costs. To address this, we developed an optimal control framework aimed at identifying strategies that minimize such costs while ensuring full control of a cross-regional outbreak of emerging infectious diseases. Our approach uses a spatial SEIR model with interventions for the epidemic process, and incorporates population flow in a gravity model dependent on gross domestic product (GDP) and geographical distance. We applied this framework to identify an optimal control strategy for the COVID-19 outbreak caused by the Delta variant in Xi'an City, Shaanxi, China, between December 2021 and January 2022. The model was parameterized by fitting it to daily case data from each district of Xi'an City. Our findings indicate that an increase in the basic reproduction number, the latent period or the infectious period leads to a prolonged outbreak and a larger final size. This indicates that diseases with greater transmissibility are more challenging and costly to control, and so it is important for governments to quickly identify cases and implement control strategies. Indeed, the optimal control strategy we identified suggests that more costly control measures should be implemented as soon as they are deemed necessary. Our results demonstrate that optimal control regimes exhibit spatial, economic, and population heterogeneity. More populated and economically developed regions require a robust regular surveillance mechanism to ensure timely detection and control of imported infections. Regions with higher GDP tend to experience larger-scale epidemics and, consequently, require higher control costs. Notably, our proposed optimal strategy significantly reduced costs compared to the actual expenditures for the Xi'an outbreak.

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来源期刊
PLoS Computational Biology
PLoS Computational Biology BIOCHEMICAL RESEARCH METHODS-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.10
自引率
4.70%
发文量
820
审稿时长
2.5 months
期刊介绍: PLOS Computational Biology features works of exceptional significance that further our understanding of living systems at all scales—from molecules and cells, to patient populations and ecosystems—through the application of computational methods. Readers include life and computational scientists, who can take the important findings presented here to the next level of discovery. Research articles must be declared as belonging to a relevant section. More information about the sections can be found in the submission guidelines. Research articles should model aspects of biological systems, demonstrate both methodological and scientific novelty, and provide profound new biological insights. Generally, reliability and significance of biological discovery through computation should be validated and enriched by experimental studies. Inclusion of experimental validation is not required for publication, but should be referenced where possible. Inclusion of experimental validation of a modest biological discovery through computation does not render a manuscript suitable for PLOS Computational Biology. Research articles specifically designated as Methods papers should describe outstanding methods of exceptional importance that have been shown, or have the promise to provide new biological insights. The method must already be widely adopted, or have the promise of wide adoption by a broad community of users. Enhancements to existing published methods will only be considered if those enhancements bring exceptional new capabilities.
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