在大肠杆菌中稳定整合多拷贝目标基因的双质粒 Mini-Tn5 系统

IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2024-11-15 Epub Date: 2024-10-17 DOI:10.1021/acssynbio.4c00140
Menghui Liu, Wei Ge, Guomei Zhong, Yuqing Yang, Luying Xun, Yongzhen Xia
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引用次数: 0

摘要

工程微生物生产有价值代谢物的效率凸显了稳定和可控基因表达的重要性。虽然基于质粒的方法具有灵活性,但将基因整合到宿主染色体中可以在没有选择压力的情况下建立稳定性。然而,实现定点定向多拷贝整合面临着定点选择和稳定性等挑战。我们引入了一种稳定的多拷贝整合方法,利用新颖的双质粒 mini-Tn5 系统将基因插入大肠杆菌的基因组。感兴趣的基因与可移除的抗生素抗性基因结合在一起。在筛选出带有插入基因的细菌后,抗生素抗性基因被移除。经过优化,单轮整合效率约为每个受体细胞 5.5 × 10-3。六轮整合后,RecA+菌株MG1655和RecA-菌株XL1-Blue MRF'中的egfp基因拷贝数分别为19和5。此外,我们还将聚羟基丁酸(PHB)合成基因簇整合到大肠杆菌 MG1655 中,与将该基因簇整合到高拷贝质粒上的菌株相比,整合后的 8 拷贝菌株能产生更多的 PHB。该方法能有效地在各种大肠杆菌菌株中产生基因插入,而且插入的基因在长时间培养后也很稳定。这种稳定的高拷贝整合工具为合成生物学的多种应用提供了潜力。
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Dual-Plasmid Mini-Tn5 System to Stably Integrate Multicopy of Target Genes in Escherichia coli.

The efficiency of valuable metabolite production by engineered microorganisms underscores the importance of stable and controllable gene expression. While plasmid-based methods offer flexibility, integrating genes into host chromosomes can establish stability without selection pressure. However, achieving site-directed multicopy integration presents challenges, including site selection and stability. We introduced a stable multicopy integration method by using a novel dual-plasmid mini-Tn5 system to insert genes into Escherichia coli's genome. The gene of interest was combined with a removable antibiotic resistance gene. After the selection of bacteria with inserted genes, the antibiotic resistance gene was removed. Optimizations yielded an integration efficiency of approximately 5.5 × 10-3 per recipient cell in a single round. Six rounds of integration resulted in 19 and 5 copies of the egfp gene in the RecA+ strain MG1655 and the RecA- strain XL1-Blue MRF', respectively. Additionally, we integrated a polyhydroxybutyrate (PHB) synthesis gene cluster into E. coli MG1655, yielding an 8-copy integration strain producing more PHB than strains with the cluster on a high-copy plasmid. The method was efficient in generating gene insertions in various E. coli strains, and the inserted genes were stable after extended culture. This stable, high-copy integration tool offers potential for diverse applications in synthetic biology.

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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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