痛风性关节炎患者中由 circRNA 和 lncRNA 介导的共调 ceRNA 网络。

IF 2.1 4区 医学 Q3 GENETICS & HEREDITY BMC Medical Genomics Pub Date : 2024-11-07 DOI:10.1186/s12920-024-02038-8
Yanqiu Xu, Jiayu Tian, Miao Wang, Jinkun Liu, Wenfu Cao, Bin Wu
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引用次数: 0

摘要

大量研究表明,信使RNA(mRNA)和非编码RNA(包括长非编码RNA(lncRNA)、环状RNA(circRNA)和microRNA(miRNA))参与了痛风性关节炎的发病,但其调控机制尚未阐明。在此,我们应用全转录组测序技术鉴定了痛风患者与正常人之间差异表达的circRNA、lncRNA、miRNA和mRNA,并根据竞争性内源性RNA(ceRNA)理论构建了痛风性关节炎发病过程中circRNA和lncRNA的共调网络,以加深我们对该疾病发病机制的理解。本研究最重要的发现是痛风性关节炎中circRNA和lncRNA的共调ceRNA网络。循环RNA novel_circ_0030384和lncRNA AAMP、TRIM16、PKN1、XLOC_184579和XLOC_189826是共调网络中的上游基因。这些上游基因上调了 miR550a-5p 和 miR550a-3-5p,从而下调了 PSME1 和 FERMT3 的表达。这些 mRNA 参与蛋白酶体动力学、抗原处理和递呈以及血小板活化,而这些都与痛风性关节炎的炎症有关。此外,circRNA和lncRNA上调了miR550a-5p,从而下调了GRK2和OS9的表达。研究还证明,PSME1、FERMT3、GRK2 和 OS9 的下调会加重痛风性关节炎的体外症状。总之,这些基因通过趋化因子信号调节中性粒细胞功能,介导痛风性关节炎的炎症反应。
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Co-regulated ceRNA network mediated by circRNA and lncRNA in patients with gouty arthritis.

Numerous studies have demonstrated the involvement of messenger RNAs (mRNAs) and non-coding RNAs, including long non-coding RNAs (lncRNA), circular RNAs (circRNAs) and microRNA (miRNAs), in gouty arthritis onset; however, the regulatory mechanism has not yet been elucidated. Here, we applied whole-transcriptome sequencing to identify the differentially expressed circRNAs, lncRNAs, miRNAs and mRNAs between the gout patients and normal people, and constructed co-regulated networks of circRNAs and lncRNAs according to the competitive endogenous RNA (ceRNA) theory for gouty arthritis onset to improve our understanding of the pathogenesis of this disease. The most significant finding of this study is the co-regulated ceRNA network of circRNAs and lncRNAs in gouty arthritis. The circRNA novel_circ_0030384 and the lncRNAs AAMP, TRIM16, PKN1, XLOC_184579 and XLOC_189826 were upstream genes in the co-regulated network. These upstream genes upregulated miR550a-5p and miR550a-3-5p, which downregulated PSME1 and FERMT3 expression. These mRNAs participated in proteasome dynamics, antigen processing and presentation, and platelet activation, which are associated with inflammation in gouty arthritis. In addition, the circRNA and lncRNAs upregulated miR550a-5p, which downregulated GRK2 and OS9 expression. Also, it proved that the down-regulated of PSME1, FERMT3, GRK2 and OS9 can aggravate gouty arthritis in vitro. In summary, these genes mediate inflammation in gouty arthritis through chemokine signaling to regulate neutrophil function.

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来源期刊
BMC Medical Genomics
BMC Medical Genomics 医学-遗传学
CiteScore
3.90
自引率
0.00%
发文量
243
审稿时长
3.5 months
期刊介绍: BMC Medical Genomics is an open access journal publishing original peer-reviewed research articles in all aspects of functional genomics, genome structure, genome-scale population genetics, epigenomics, proteomics, systems analysis, and pharmacogenomics in relation to human health and disease.
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