多组学与动态网络生物标记物算法预示肺腺癌的器官特异性转移

IF 14.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Nature Communications Pub Date : 2024-11-14 DOI:10.1038/s41467-024-53849-3
Xiaoshen Zhang, Kai Xiao, Yaokai Wen, Fengying Wu, Guanghui Gao, Luonan Chen, Caicun Zhou
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引用次数: 0

摘要

早期发现肺癌转移的有效策略对提高肺癌患者的生存率具有重要意义。在此,我们利用四个主要类型肺癌远处转移的两个临床队列、原发病灶的单细胞 RNA 测序(scRNA-seq)和血清的液相色谱-质谱数据,通过动态网络生物标记(DNB)算法,展示了预示肺癌特定部位转移的标记基因和血清分泌组。同时,我们还在每个转移状态轨迹中定位了癌细胞的中间状态及其基因特征,在这一阶段的癌细胞仍没有特定的有机体。此外,我们还成功构建并验证了基于筛选的 scRNA-seq 数据的集成神经网络模型,以预测癌细胞的转移状态轨迹。总之,我们的研究为肺癌转移前状态的定位提供了洞察力,并主要考察了其临床应用价值,有助于以更可行、更有效的方法早期检测肺癌转移。
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Multi-omics with dynamic network biomarker algorithm prefigures organ-specific metastasis of lung adenocarcinoma

Efficacious strategies for early detection of lung cancer metastasis are of significance for improving the survival of lung cancer patients. Here we show the marker genes and serum secretome foreshadowing the lung cancer site-specific metastasis through dynamic network biomarker (DNB) algorithm, utilizing two clinical cohorts of four major types of lung cancer distant metastases, with single-cell RNA sequencing (scRNA-seq) of primary lesions and liquid chromatography-mass spectrometry data of sera. Also, we locate the intermediate status of cancer cells, along with its gene signatures, in each metastatic state trajectory that cancer cells at this stage still have no specific organotropism. Furthermore, an integrated neural network model based on the filtered scRNA-seq data is successfully constructed and validated to predict the metastatic state trajectory of cancer cells. Overall, our study provides an insight to locate the pre-metastasis status of lung cancer and primarily examines its clinical application value, contributing to the early detection of lung cancer metastasis in a more feasible and efficacious way.

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来源期刊
Nature Communications
Nature Communications Biological Science Disciplines-
CiteScore
24.90
自引率
2.40%
发文量
6928
审稿时长
3.7 months
期刊介绍: Nature Communications, an open-access journal, publishes high-quality research spanning all areas of the natural sciences. Papers featured in the journal showcase significant advances relevant to specialists in each respective field. With a 2-year impact factor of 16.6 (2022) and a median time of 8 days from submission to the first editorial decision, Nature Communications is committed to rapid dissemination of research findings. As a multidisciplinary journal, it welcomes contributions from biological, health, physical, chemical, Earth, social, mathematical, applied, and engineering sciences, aiming to highlight important breakthroughs within each domain.
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