{"title":"Caryophanales 目分类说明:12 个新科的描述和 21 个科的修订描述。","authors":"Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng","doi":"10.1099/ijsem.0.006539","DOIUrl":null,"url":null,"abstract":"<p><p>The order <i>Caryophanales</i>, belonging to class <i>Bacilli</i>, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of <i>Caryophanales</i> at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of <i>Caryophanales</i> based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order <i>Caryophanales</i> be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the <i>IJSEM</i> (Validation List no. 215) and 12 novel families for which we propose the names <i>Aureibacillaceae</i>, <i>Cytobacillaceae</i>, <i>Domibacillaceae</i>, <i>Falsibacillaceae</i>, <i>Heyndrickxiaceae</i>, <i>Lottiidibacillaceae</i>, <i>Oxalophagaceae</i>, <i>Pradoshiaceae</i>, <i>Rossellomoreaceae</i>, <i>Schinkiaceae</i>, <i>Sulfoacidibacillaceae</i> and <i>Sutcliffiellaceae</i>. This work represents a genomic sequence-based and systematic framework for classifying the order <i>Caryophanales</i> at the family level, providing new insights into its evolution.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 11","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A taxonomic note on the order <i>Caryophanales</i>: description of 12 novel families and emended description of 21 families.\",\"authors\":\"Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng\",\"doi\":\"10.1099/ijsem.0.006539\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The order <i>Caryophanales</i>, belonging to class <i>Bacilli</i>, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of <i>Caryophanales</i> at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of <i>Caryophanales</i> based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order <i>Caryophanales</i> be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the <i>IJSEM</i> (Validation List no. 215) and 12 novel families for which we propose the names <i>Aureibacillaceae</i>, <i>Cytobacillaceae</i>, <i>Domibacillaceae</i>, <i>Falsibacillaceae</i>, <i>Heyndrickxiaceae</i>, <i>Lottiidibacillaceae</i>, <i>Oxalophagaceae</i>, <i>Pradoshiaceae</i>, <i>Rossellomoreaceae</i>, <i>Schinkiaceae</i>, <i>Sulfoacidibacillaceae</i> and <i>Sutcliffiellaceae</i>. This work represents a genomic sequence-based and systematic framework for classifying the order <i>Caryophanales</i> at the family level, providing new insights into its evolution.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"74 11\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006539\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006539","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
A taxonomic note on the order Caryophanales: description of 12 novel families and emended description of 21 families.
The order Caryophanales, belonging to class Bacilli, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of Caryophanales at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of Caryophanales based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order Caryophanales be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the IJSEM (Validation List no. 215) and 12 novel families for which we propose the names Aureibacillaceae, Cytobacillaceae, Domibacillaceae, Falsibacillaceae, Heyndrickxiaceae, Lottiidibacillaceae, Oxalophagaceae, Pradoshiaceae, Rossellomoreaceae, Schinkiaceae, Sulfoacidibacillaceae and Sutcliffiellaceae. This work represents a genomic sequence-based and systematic framework for classifying the order Caryophanales at the family level, providing new insights into its evolution.
期刊介绍:
Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names.
The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including:
Identification, characterisation and culture preservation
Microbial evolution and biodiversity
Molecular environmental work with strong taxonomic or evolutionary content
Nomenclature
Taxonomy and phylogenetics.