Caryophanales 目分类说明:12 个新科的描述和 21 个科的修订描述。

IF 2 3区 生物学 Q4 MICROBIOLOGY International journal of systematic and evolutionary microbiology Pub Date : 2024-11-01 DOI:10.1099/ijsem.0.006539
Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng
{"title":"Caryophanales 目分类说明:12 个新科的描述和 21 个科的修订描述。","authors":"Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng","doi":"10.1099/ijsem.0.006539","DOIUrl":null,"url":null,"abstract":"<p><p>The order <i>Caryophanales</i>, belonging to class <i>Bacilli</i>, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of <i>Caryophanales</i> at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of <i>Caryophanales</i> based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order <i>Caryophanales</i> be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the <i>IJSEM</i> (Validation List no. 215) and 12 novel families for which we propose the names <i>Aureibacillaceae</i>, <i>Cytobacillaceae</i>, <i>Domibacillaceae</i>, <i>Falsibacillaceae</i>, <i>Heyndrickxiaceae</i>, <i>Lottiidibacillaceae</i>, <i>Oxalophagaceae</i>, <i>Pradoshiaceae</i>, <i>Rossellomoreaceae</i>, <i>Schinkiaceae</i>, <i>Sulfoacidibacillaceae</i> and <i>Sutcliffiellaceae</i>. This work represents a genomic sequence-based and systematic framework for classifying the order <i>Caryophanales</i> at the family level, providing new insights into its evolution.</p>","PeriodicalId":14390,"journal":{"name":"International journal of systematic and evolutionary microbiology","volume":"74 11","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A taxonomic note on the order <i>Caryophanales</i>: description of 12 novel families and emended description of 21 families.\",\"authors\":\"Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng\",\"doi\":\"10.1099/ijsem.0.006539\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The order <i>Caryophanales</i>, belonging to class <i>Bacilli</i>, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of <i>Caryophanales</i> at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of <i>Caryophanales</i> based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order <i>Caryophanales</i> be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the <i>IJSEM</i> (Validation List no. 215) and 12 novel families for which we propose the names <i>Aureibacillaceae</i>, <i>Cytobacillaceae</i>, <i>Domibacillaceae</i>, <i>Falsibacillaceae</i>, <i>Heyndrickxiaceae</i>, <i>Lottiidibacillaceae</i>, <i>Oxalophagaceae</i>, <i>Pradoshiaceae</i>, <i>Rossellomoreaceae</i>, <i>Schinkiaceae</i>, <i>Sulfoacidibacillaceae</i> and <i>Sutcliffiellaceae</i>. This work represents a genomic sequence-based and systematic framework for classifying the order <i>Caryophanales</i> at the family level, providing new insights into its evolution.</p>\",\"PeriodicalId\":14390,\"journal\":{\"name\":\"International journal of systematic and evolutionary microbiology\",\"volume\":\"74 11\",\"pages\":\"\"},\"PeriodicalIF\":2.0000,\"publicationDate\":\"2024-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"International journal of systematic and evolutionary microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1099/ijsem.0.006539\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"International journal of systematic and evolutionary microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1099/ijsem.0.006539","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

属于芽孢杆菌科的卡里奥芬菌目(Caryophanales)分布于全球各种生态系统中。目前,该目由 12 个科组成,在表型、生态和基因型方面存在巨大差异。目前,Caryophanales 在科一级的分类主要基于 16S rRNA 基因测序分析和共同表型特征的存在,这导致了明显的异常。本研究基于 1080 个可获得的高质量类型菌株基因组序列,对 Caryophanales 的分类进行了修订。评估参数包括核心基因组系统发育、成对平均 aa 同源性、特定品系核心基因、生理标准和生态参数。根据这种多相方法的结果,我们建议将aryophanales 目重新划分为 41 个科,其中包括现有的 12 个科、IJSEM 最近审定列表(审定列表第 215 号)中的 17 个科和 12 个新科。215)中的 17 个科,以及 12 个新科,我们建议将其命名为 Aureibacillaceae、Cytobacillaceae、Domibacillaceae、Falsibacillaceae、Heyndrickxiaceae、Lottiidibacillaceae、Oxalophagaceae、Pradoshiaceae、Rossellomoreaceae、Schinkiaceae、Sulfoacidibacillaceae 和 Sutcliffiellaceae。这项工作为在科一级对aryophanales 目进行分类提供了一个基于基因组序列的系统框架,为其进化提供了新的视角。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
A taxonomic note on the order Caryophanales: description of 12 novel families and emended description of 21 families.

The order Caryophanales, belonging to class Bacilli, is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of Caryophanales at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of Caryophanales based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order Caryophanales be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the IJSEM (Validation List no. 215) and 12 novel families for which we propose the names Aureibacillaceae, Cytobacillaceae, Domibacillaceae, Falsibacillaceae, Heyndrickxiaceae, Lottiidibacillaceae, Oxalophagaceae, Pradoshiaceae, Rossellomoreaceae, Schinkiaceae, Sulfoacidibacillaceae and Sutcliffiellaceae. This work represents a genomic sequence-based and systematic framework for classifying the order Caryophanales at the family level, providing new insights into its evolution.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
期刊最新文献
Corrigendum. Proposal of Lactobacillus amylovorus subsp. animalis subsp. nov. and an emended description of Lactobacillus amylovorus. Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 74, part 7 of the IJSEM. Bifidobacterium favimelis sp. nov., isolated from black comb honey. Microbispora maris sp. nov., a novel actinobacterium isolated from the gill of the leopard coral grouper (Plectropomus leopardus). International Committee on Systematics of Prokaryotes: subcommittee on the taxonomy of methanogenic archaea. Minutes of the closed, online meeting held 06 September 2023.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1