通过应用唾液蛋白质组学和生物信息学深入了解药物诱发的颌骨坏死。

IF 5.6 2区 生物学 International Journal of Molecular Sciences Pub Date : 2024-11-19 DOI:10.3390/ijms252212405
Vladimíra Schwartzová, Galina Laputková, Ivan Talian, Miroslav Marcin, Zuzana Schwartzová, Dominik Glaba
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引用次数: 0

摘要

长期使用双膦酸盐治疗会增加与药物相关的颌骨坏死(MRONJ)风险。目前,还没有用于预测诊断 MRONJ 的临床有用的生物标志物。为了研究参与 MRONJ 发病机制的潜在关键蛋白,研究人员对唾液进行了蛋白质组 LC-MS/MS 分析。利用 Cytoscape 平台,使用 BiNGO、ClueGO、cytoHubba、MCODE、KEGG 和 ReactomeFI 软件包分析了差异表达蛋白(DEPs)。共鉴定出 1545 个 DEPs,其中包括 43 个上调基因和 11 个下调基因,截止值为 1.5 倍,adj. p 值小于 0.05。该分析提供了一组枢纽基因,包括 APOA2、APOB、APOC2、APOC3、APOE、APOM、C4B、C4BPA、C9、FGG、GC、HP、HRG、LPA、SAA2-SAA4 和 SERPIND1。生物过程 GO 中最常见的术语是大分子复合物重塑、蛋白-脂质复合物重塑和血浆脂蛋白颗粒重塑。DEPs 主要参与了与脂蛋白、先天性免疫系统、补体和凝血级联相关的信号通路。目前的研究增进了我们对 MRONJ 潜在分子机制的了解。特别是,这项研究确定了与这种疾病的发生和发展有关的主要唾液蛋白。
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Insights into Medication-Induced Osteonecrosis of the Jaw Through the Application of Salivary Proteomics and Bioinformatics.

Long-term treatment with bisphosphonates is accompanied by an increased risk of medication-related osteonecrosis of the jaw (MRONJ). Currently, no clinically useful biomarkers for the predictive diagnosis of MRONJ are available. To investigate the potential key proteins involved in the pathogenesis of MRONJ, a proteomic LC-MS/MS analysis of saliva was performed. Differentially expressed proteins (DEPs) were analyzed using BiNGO, ClueGO, cytoHubba, MCODE, KEGG, and ReactomeFI software packages using Cytoscape platforms. In total, 1545 DEPs were identified, including 43 up- and 11 down-regulated with a 1.5-fold cut-off value and adj. p-value < 0.05. The analysis provided a panel of hub genes, including APOA2, APOB, APOC2, APOC3, APOE, APOM, C4B, C4BPA, C9, FGG, GC, HP, HRG, LPA, SAA2-SAA4, and SERPIND1. The most prevalent terms in GO of the biological process were macromolecular complex remodeling, protein-lipid complex remodeling, and plasma lipoprotein particle remodeling. DEPs were mainly involved in signaling pathways associated with lipoproteins, the innate immune system, complement, and coagulation cascades. The current investigation advanced our knowledge of the molecular mechanisms underlying MRONJ. In particular, the research identified the principal salivary proteins that are implicated in the onset and progression of this condition.

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期刊介绍: The International Journal of Molecular Sciences (ISSN 1422-0067) provides an advanced forum for chemistry, molecular physics (chemical physics and physical chemistry) and molecular biology. It publishes research articles, reviews, communications and short notes. Our aim is to encourage scientists to publish their theoretical and experimental results in as much detail as possible. Therefore, there is no restriction on the length of the papers or the number of electronics supplementary files. For articles with computational results, the full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material (including animated pictures, videos, interactive Excel sheets, software executables and others).
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