基于无损压缩的空间编码DNA数据存储方法。

IF 2.1 3区 物理与天体物理 Q2 PHYSICS, MULTIDISCIPLINARY Entropy Pub Date : 2024-12-20 DOI:10.3390/e26121116
Esra Şatır
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引用次数: 0

摘要

随着全球数据量的快速增长和信息技术的快速发展,DNA序列已在计算机上收集和处理。这产生了一个新的和有吸引力的生物信息学领域,DNA存储,其中DNA已被认为是一个巨大的潜在存储介质。据了解,1克DNA可以存储215gb的数据,而存储在DNA中的数据可以保存数万年。本研究提出了一种无损、可逆的DNA数据存储方法。该方法采用二维(2D)空间域中每个DNA碱基的矢量表示,用于编码和解码。所提出的方法的结构是可逆的,使得解压缩过程成为可能。通过实验对其容量、压缩比、稳定性和可靠性进行了研究。结果表明,该方法在容量方面比文献中其他已知算法要高效得多。
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A DNA Data Storage Method Using Spatial Encoding Based Lossless Compression.

With the rapid increase in global data and rapid development of information technology, DNA sequences have been collected and manipulated on computers. This has yielded a new and attractive field of bioinformatics, DNA storage, where DNA has been considered as a great potential storage medium. It is known that one gram of DNA can store 215 GB of data, and the data stored in the DNA can be preserved for tens of thousands of years. In this study, a lossless and reversible DNA data storage method was proposed. The proposed approach employs a vector representation of each DNA base in a two-dimensional (2D) spatial domain for both encoding and decoding. The structure of the proposed method is reversible, rendering the decompression procedure possible. Experiments were performed to investigate the capacity, compression ratio, stability, and reliability. The obtained results show that the proposed method is much more efficient in terms of capacity than other known algorithms in the literature.

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来源期刊
Entropy
Entropy PHYSICS, MULTIDISCIPLINARY-
CiteScore
4.90
自引率
11.10%
发文量
1580
审稿时长
21.05 days
期刊介绍: Entropy (ISSN 1099-4300), an international and interdisciplinary journal of entropy and information studies, publishes reviews, regular research papers and short notes. Our aim is to encourage scientists to publish as much as possible their theoretical and experimental details. There is no restriction on the length of the papers. If there are computation and the experiment, the details must be provided so that the results can be reproduced.
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