基因组时代对基因组测序、数据解释和数据库使用的无限渴求:通往快速通道作物改良之路。

Q3 Biochemistry, Genetics and Molecular Biology Genetics Research International Pub Date : 2015-01-01 Epub Date: 2015-03-19 DOI:10.1155/2015/684321
Arun Prabhu Dhanapal, Mahalingam Govindaraj
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引用次数: 14

摘要

随着廉价的下一代测序方法的出现,已测序的作物基因组和相关基因组资源的数量正在迅速增长。数据库已成为科学研究的各个方面,包括基础和应用植物和动物科学的一个组成部分。近年来,随着直接和间接基因组学以及其他组学方法的数据集数量不断增加,数据库的重要性不断增加。数据库和相关的门户网站至少提供了一套统一的工具,并对广泛的作物基因组进行了自动化分析。本文综述了在推进基因组时代中处理作物植物数据库利用的一些基本术语和注意事项。利用数据库与其他比较基因组学工具和数据解释平台进行变异分析。本综述的主要重点是为农业上重要作物的基因组研究提供平台和数据库。这些数据库在应用作物改良项目中的应用仍在广泛实现;否则,测序的终结就不远了。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement.

The number of sequenced crop genomes and associated genomic resources is growing rapidly with the advent of inexpensive next generation sequencing methods. Databases have become an integral part of all aspects of science research, including basic and applied plant and animal sciences. The importance of databases keeps increasing as the volume of datasets from direct and indirect genomics, as well as other omics approaches, keeps expanding in recent years. The databases and associated web portals provide at a minimum a uniform set of tools and automated analysis across a wide range of crop plant genomes. This paper reviews some basic terms and considerations in dealing with crop plant databases utilization in advancing genomic era. The utilization of databases for variation analysis with other comparative genomics tools, and data interpretation platforms are well described. The major focus of this review is to provide knowledge on platforms and databases for genome-based investigations of agriculturally important crop plants. The utilization of these databases in applied crop improvement program is still being achieved widely; otherwise, the end for sequencing is not far away.

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来源期刊
Genetics Research International
Genetics Research International Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
2.90
自引率
0.00%
发文量
0
期刊介绍: Genetics Research International is a peer-reviewed, Open Access journal that publishes original research articles as well as review articles in all areas of genetics and genomics. The journal focuses on articles bearing on heredity, biochemistry, and molecular biology, as well as clinical findings.
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