GPR142抗2型糖尿病的布尔网络模型及基于系统和生物电路方法的相对动态变化比分析。

Systems and Synthetic Biology Pub Date : 2015-06-01 Epub Date: 2015-03-14 DOI:10.1007/s11693-015-9163-0
Aman Chandra Kaushik, Shakti Sahi
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引用次数: 19

摘要

系统生物学解决了基因组学数据分析中的挑战,特别是在各种信号通路上使用元数据方法分析复杂基因和蛋白质相互作用。在本文中,我们报道了系统生物学和生物电路方法构建通路并确定早期基因和蛋白质相互作用,以预测2型糖尿病的GPR142反应。从文献中检索与2型糖尿病相关的基因、蛋白等分子信息,并对GPR142进行动力学模拟,以确定其动态相互作用。本工作的主要目的是综合利用系统生物学和生物电路设计GPR142的生化途径。“综合”一词是指构建细胞信号通路的生物回路,特别是激素通路疾病。本文的重点是逻辑组件和逻辑电路,通过使用这些应用程序,用户可以创建复杂的虚拟电路。逻辑门过程只代表真或假,并调查生物调节回路是否活跃或不活跃。使用的基本门有与门、非与门、或门、异或门和非门,以及许多这些基本门和一些派生门的集成电路组成。生物电路可能在未来的生物医学科学中有一个应用,它可能涉及在人体细胞中放置一个微芯片来调节激素疾病的上下调节。
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Boolean network model for GPR142 against Type 2 diabetes and relative dynamic change ratio analysis using systems and biological circuits approach.

Systems biology addresses challenges in the analysis of genomics data, especially for complex genes and protein interactions using Meta data approach on various signaling pathways. In this paper, we report systems biology and biological circuits approach to construct pathway and identify early gene and protein interactions for predicting GPR142 responses in Type 2 diabetes. The information regarding genes, proteins and other molecules involved in Type 2 diabetes were retrieved from literature and kinetic simulation of GPR142 was carried out in order to determine the dynamic interactions. The major objective of this work was to design a GPR142 biochemical pathway using both systems biology as well as biological circuits synthetically. The term 'synthetically' refers to building biological circuits for cell signaling pathway especially for hormonal pathway disease. The focus of the paper is on logical components and logical circuits whereby using these applications users can create complex virtual circuits. Logic gates process represents only true or false and investigates whether biological regulatory circuits are active or inactive. The basic gates used are AND, NAND, OR, XOR and NOT gates and Integrated circuit composition of many such basic gates and some derived gates. Biological circuits may have a futuristic application in biomedical sciences which may involve placing a micro chip in human cells to modulate the down or up regulation of hormonal disease.

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