凋亡相关的长链非编码RNA标记预测透明细胞肾癌的预后。

IF 1.1 4区 医学 Q3 BIOLOGY Folia Biologica Pub Date : 2022-01-01
J W Liu, F Supandi, S K Dhillon
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引用次数: 0

摘要

透明细胞肾细胞癌(ccRCC)是一种非常常见的肾癌,占肾癌死亡的大多数。尽管许多研究都在寻找ccRCC的预后特征,但我们认为,铁凋亡涉及依赖于铁积累的程序性细胞死亡,在ccRCC中具有治疗潜力。最近的研究表明,长链非编码rna (lncRNAs)参与了铁细胞凋亡相关的肿瘤过程,并与ccRCC患者的生存密切相关。因此,在本研究中,我们旨在进一步探讨凋亡相关lncRNAs (frl)在ccRCC中的作用,希望建立预测ccRCC生存结局的信号。我们分析了来自癌症基因组图谱数据库(TCGA)的转录组数据和来自FerrDb的铁凋亡相关基因(frg),利用Pearson’s相关性确定frl。Lasso Cox回归分析和多变量Cox比例风险模型筛选了17个最佳frl,用于发展预后特征。然后绘制Kaplan-Meier生存曲线和ROC曲线,以验证识别特征的敏感性、特异性和准确性。利用基因集富集分析和CIBERSORT算法探索这些frl在肿瘤微环境中的作用。由此可见,这些模型在预测ccRCC患者预后方面表现良好,并与肿瘤分级、肿瘤分期、肿瘤免疫浸润等临床病理参数相关。总之,我们的研究结果为ccRCC中与铁细胞凋亡相关的lncrna提供了新的见解,这些lncrna是研究ccRCC肿瘤发生的重要靶点。
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Ferroptosis-Related Long Noncoding RNA Signature Predicts Prognosis of Clear Cell Renal Carcinoma.

Clear cell renal cell carcinoma (ccRCC) is very common and accounts for most kidney cancer deaths. While many studies are being conducted in finding the prognostic signatures of ccRCC, we believe that ferroptosis, which involves programmed cell death dependent on iron accumulation, has therapeutic potential in ccRCC. Recent research has shown that long noncoding RNAs (lncRNAs) are involved in ferroptosis-related tumour processes and are closely related to survival in patients with ccRCC. Hence, in this study we aim to further explore the role of ferroptosis-related lncRNAs (FRLs) in ccRCC, hoping to establish a signature to predict the survival outcome of ccRCC. We analysed transcriptome data from The Cancer Genome Atlas database (TCGA) and ferroptosis-related genes (FRGs) from FerrDb to identify FRLs using Pearson's correlation. Lasso Cox regression analysis and multivariate Cox proportional hazards models screened seventeen optimal FRLs for developing prognostic signatures. Kaplan-Meier survival curves and ROC curves were then plotted for validating the sensitivity, specificity, and accuracy of the identified signatures. Gene Set Enrichment Analysis and CIBERSORT algorithm were deployed to explore the role of these FRLs in the tumour microenvironment. It was concluded that these models demonstrate excellent performance in predicting prognosis among patients with ccRCC, also indicating association with the clinicopathologic parameters such as tumour grade, tumour stage and tumour immune infiltration. In conclusion, our findings provide novel insights into ferroptosis-related lncRNAs in ccRCC, which are important targets for investigating the tumorigenesis of ccRCC.

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来源期刊
Folia Biologica
Folia Biologica 医学-生物学
CiteScore
1.40
自引率
0.00%
发文量
5
审稿时长
3 months
期刊介绍: Journal of Cellular and Molecular Biology publishes articles describing original research aimed at the elucidation of a wide range of questions of biology and medicine at the cellular and molecular levels. Studies on all organisms as well as on human cells and tissues are welcome.
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