Jingxin Li, Wei Guo, Manman Shi, Yajing Cao, Gejiao Wang
{"title":"具有生物修复Cd, Cr和Se污染潜力的ferferarius Paenibacillus CY1T的高质量基因组序列草图。","authors":"Jingxin Li, Wei Guo, Manman Shi, Yajing Cao, Gejiao Wang","doi":"10.1186/s40793-017-0273-z","DOIUrl":null,"url":null,"abstract":"<p><p><i>Paenibacillus ferrarius</i> CY1<sup>T</sup> (= KCTC 33419<sup>T</sup> = CCTCC AB2013369<sup>T</sup>) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO<sub>4</sub><sup>2-</sup>) to S<sup>2-</sup>, which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se<sup>0</sup>), respectively. Thus, strain CY1<sup>T</sup> has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1<sup>T</sup>, together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.</p>","PeriodicalId":21965,"journal":{"name":"Standards in Genomic Sciences","volume":"12 ","pages":"60"},"PeriodicalIF":0.0000,"publicationDate":"2017-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s40793-017-0273-z","citationCount":"4","resultStr":"{\"title\":\"High-quality-draft genomic sequence of <i>Paenibacillus ferrarius</i> CY1<sup>T</sup> with the potential to bioremediate Cd, Cr and Se contamination.\",\"authors\":\"Jingxin Li, Wei Guo, Manman Shi, Yajing Cao, Gejiao Wang\",\"doi\":\"10.1186/s40793-017-0273-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Paenibacillus ferrarius</i> CY1<sup>T</sup> (= KCTC 33419<sup>T</sup> = CCTCC AB2013369<sup>T</sup>) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO<sub>4</sub><sup>2-</sup>) to S<sup>2-</sup>, which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se<sup>0</sup>), respectively. Thus, strain CY1<sup>T</sup> has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1<sup>T</sup>, together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.</p>\",\"PeriodicalId\":21965,\"journal\":{\"name\":\"Standards in Genomic Sciences\",\"volume\":\"12 \",\"pages\":\"60\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-10-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1186/s40793-017-0273-z\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Standards in Genomic Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s40793-017-0273-z\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2017/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q3\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Standards in Genomic Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s40793-017-0273-z","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2017/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
High-quality-draft genomic sequence of Paenibacillus ferrarius CY1T with the potential to bioremediate Cd, Cr and Se contamination.
Paenibacillus ferrarius CY1T (= KCTC 33419T = CCTCC AB2013369T) is a Gram-positive, aerobic, endospore-forming, motile and rod-shaped bacterium isolated from iron mineral soil. This bacterium reduces sulfate (SO42-) to S2-, which reacts with Cd(II) to generate precipitated CdS. It also reduces the toxic chromate [Cr(VI)] and selenite [Se(VI)] to the less bioavailable chromite [Cr(III)] and selenium (Se0), respectively. Thus, strain CY1T has the potential to bioremediate Cd, Cr and Se contamination, which is the main reason for the interest in sequencing its genome. Here we describe the features of strain CY1T, together with the draft genome sequence and its annotation. The 9,184,169 bp long genome exhibits a G + C content of 45.6%, 7909 protein-coding genes and 81 RNA genes. Nine putative Se(IV)-reducing genes, five putative Cr(VI) reductase and nine putative sulfate-reducing genes were identified in the genome.