Michael J LaGier, Mark McDaniel, Alyssa Ragner, Amber Castillo
{"title":"一种潜在抗生素生产菌株的鉴定和特征描述。","authors":"Michael J LaGier, Mark McDaniel, Alyssa Ragner, Amber Castillo","doi":"10.7150/jgen.70066","DOIUrl":null,"url":null,"abstract":"<p><p>Antibiotic resistance continues to be a significant public health challenge. Soil bacteria represent a potential source of yet to be discovered antimicrobials. The screening of Iowa (United States) soils yielded the identification of a strain of <i>Pantoea ananatis</i> (MMB-1), which displayed an antimicrobial-producing phenotype against a bacterium (<i>Bacillus subtilis</i>) representative of Gram-positive bacteria. Crude, organic, extracts of MMB-1 retained the anti-microbial activity. The draft genome of strain MMB-1 contains a total of 4,634,340 bp, and 4,624 protein-encoding genes. Consistent with phenotypic observation, the genome of MMB-1 encodes for a number of putative secondary metabolite biosynthetic gene clusters, including those known to be involved in the production of the antibiotics lankacidin C and bottromycin. This study increases our overall understanding of <i>Panteoa</i> as a group, and is also consistent with the notion that members of this genus have significant potential as useful natural product producers.</p>","PeriodicalId":15834,"journal":{"name":"Journal of Genomics","volume":" ","pages":"26-32"},"PeriodicalIF":0.0000,"publicationDate":"2022-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8824727/pdf/","citationCount":"0","resultStr":"{\"title\":\"Identification and Characterization of a Potential Antibiotic Producing Strain of <i>Pantoea ananatis</i>.\",\"authors\":\"Michael J LaGier, Mark McDaniel, Alyssa Ragner, Amber Castillo\",\"doi\":\"10.7150/jgen.70066\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Antibiotic resistance continues to be a significant public health challenge. Soil bacteria represent a potential source of yet to be discovered antimicrobials. The screening of Iowa (United States) soils yielded the identification of a strain of <i>Pantoea ananatis</i> (MMB-1), which displayed an antimicrobial-producing phenotype against a bacterium (<i>Bacillus subtilis</i>) representative of Gram-positive bacteria. Crude, organic, extracts of MMB-1 retained the anti-microbial activity. The draft genome of strain MMB-1 contains a total of 4,634,340 bp, and 4,624 protein-encoding genes. Consistent with phenotypic observation, the genome of MMB-1 encodes for a number of putative secondary metabolite biosynthetic gene clusters, including those known to be involved in the production of the antibiotics lankacidin C and bottromycin. This study increases our overall understanding of <i>Panteoa</i> as a group, and is also consistent with the notion that members of this genus have significant potential as useful natural product producers.</p>\",\"PeriodicalId\":15834,\"journal\":{\"name\":\"Journal of Genomics\",\"volume\":\" \",\"pages\":\"26-32\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-02-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8824727/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Genomics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.7150/jgen.70066\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2022/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Genomics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.7150/jgen.70066","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
抗生素耐药性仍然是一个重大的公共卫生挑战。土壤细菌是尚未发现的抗菌素的潜在来源。通过对美国爱荷华州土壤的筛选,发现了一株泛函菌(MMB-1),它对革兰氏阳性细菌的代表细菌(枯草芽孢杆菌)具有抗菌表型。MMB-1 的有机粗提取物保留了抗微生物活性。菌株 MMB-1 的基因组草案共包含 4,634,340 bp 和 4,624 个编码蛋白质的基因。与表型观察结果一致的是,MMB-1 的基因组编码了许多推测的次级代谢物生物合成基因簇,包括那些已知参与生产抗生素兰卡霉素 C 和瓶霉素的基因簇。这项研究增加了我们对 Panteoa 作为一个类群的总体了解,也与该属成员作为有用的天然产品生产者具有巨大潜力的观点相一致。
Identification and Characterization of a Potential Antibiotic Producing Strain of Pantoea ananatis.
Antibiotic resistance continues to be a significant public health challenge. Soil bacteria represent a potential source of yet to be discovered antimicrobials. The screening of Iowa (United States) soils yielded the identification of a strain of Pantoea ananatis (MMB-1), which displayed an antimicrobial-producing phenotype against a bacterium (Bacillus subtilis) representative of Gram-positive bacteria. Crude, organic, extracts of MMB-1 retained the anti-microbial activity. The draft genome of strain MMB-1 contains a total of 4,634,340 bp, and 4,624 protein-encoding genes. Consistent with phenotypic observation, the genome of MMB-1 encodes for a number of putative secondary metabolite biosynthetic gene clusters, including those known to be involved in the production of the antibiotics lankacidin C and bottromycin. This study increases our overall understanding of Panteoa as a group, and is also consistent with the notion that members of this genus have significant potential as useful natural product producers.
期刊介绍:
Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.