肿瘤突变负担基因标记与胃癌患者预后和免疫特征的意义

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY International Journal of Genomics Pub Date : 2022-06-08 eCollection Date: 2022-01-01 DOI:10.1155/2022/7684606
Li Xiang, Chuan Lan
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引用次数: 2

摘要

胃癌是一种常见的消化道肿瘤,在全球最常见的恶性肿瘤中排名第四。免疫治疗是一种很有前景的胃癌治疗方法,尤其是晚期胃癌。然而,在临床实践中,并非所有患者都对免疫治疗敏感。近年来的研究表明,肿瘤突变负荷(TMB)与免疫治疗的反应密切相关。目前的研究确定了一个tmb相关基因的特征来预测胃癌患者的预后和免疫特征。首先,我们从癌症基因组图谱(TCGA)和国家生物技术信息中心(NCBI) GEO数据库中获取TMB数据和表达数据。然后,我们从TCGA和两个GEO队列的表达数据中提取tmb相关基因。通过单变量Cox分析,我们发现429个基因与GC患者的总生存率相关。随后,使用最小绝对收缩和选择算子分析(LASSO)和多变量Cox回归分析构建免疫预后特征。该特征可用于预测胃癌患者的预后。此外,该特征与GC患者的免疫特征密切相关。综上所述,我们的风险标记可以为胃癌患者的预后提供提示,并可能为胃癌患者制定新的免疫治疗策略提供见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Significance of a Tumor Mutation Burden Gene Signature with Prognosis and Immune Feature of Gastric Cancer Patients.

Gastric cancer (GC) is a common digestive tumor which ranks the fourth most common malignancy worldwide. Immunotherapy is a promising treatment for GC, especially for advanced gastric cancer (AGC). However, in clinical practice, not all patients are sensitive to immunotherapy. Recent studies showed that tumor mutation burden (TMB) is closely correlated with the response of immunotherapy. The current study identified a TMB-related genes' signature to predict the prognosis and immune feature of GC patients. Firstly, we acquired the TMB data and expression data from The Cancer Genome Atlas (TCGA) and the National Center for Biotechnology Information (NCBI) GEO databases. Then, we extracted TMB-related genes from the expression data of TCGA and two GEO cohorts. By using univariate Cox analysis, we identified that the 429 genes were correlated to GC patients' overall survival. Subsequently, an immune prognostic signature was constructed by using the least absolute shrinkage and selection operator analysis (LASSO) and multivariate Cox regression analysis. The signature could be utilized to predict the prognosis of GC patients. In addition, the signature showed a closed correlation with immune feature of GC patients. In conclusion, our risk signature could offer hints for the prognosis of GC patients and might provide insights to formulate new immunotherapy strategies for GC patients.

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来源期刊
International Journal of Genomics
International Journal of Genomics BIOCHEMISTRY & MOLECULAR BIOLOGY-BIOTECHNOLOGY & APPLIED MICROBIOLOGY
CiteScore
5.40
自引率
0.00%
发文量
33
审稿时长
17 weeks
期刊介绍: International Journal of Genomics is a peer-reviewed, Open Access journal that publishes research articles as well as review articles in all areas of genome-scale analysis. Topics covered by the journal include, but are not limited to: bioinformatics, clinical genomics, disease genomics, epigenomics, evolutionary genomics, functional genomics, genome engineering, and synthetic genomics.
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