caridian对虾基因组大小变异模式:对非gambarelloides Synalpheus物种的新估计。

IF 2.3 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genome Pub Date : 2022-08-01 Epub Date: 2022-08-02 DOI:10.1139/gen-2022-0015
Isabela R R Moraes, Luis Miguel Pardo, Cristian Araya-Jaime, Milena Regina Wolf, George Shigueki Yasui, Jaiber J Solano-Iguaran, Graziela Gorete Romagnoli, Kaio Cesar Chaboli Alevi, Antonio Leão Castilho
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引用次数: 0

摘要

基因组大小(GS)或DNA核含量被认为是推断动物进化模式和生活史的有用指标,包括分类、生物地理和生态情景。然而,甲壳类动物GS变化的模式及其原因仍然知之甚少。本研究旨在描述5种新热带无gambarelloides对虾(S. apioceros、S. minus、S. brevicarpus、S. fritzmueller和S. scaphoceris)的GS,并从地理和系统发育的角度比较所有Caridea次目的c值。所有动物在巴西圣保罗州海岸取样,并通过流式细胞术分析(FCA)评估GS。其c值为7.89 pg ~ 12.24 pg。甲壳类虾的GS值高于其他十足纲甲壳类。结果表明,在直接发育的对虾中,有获得更大基因组的趋势。此外,还观察到与Caridea次目生物地理(纬度)正相关的趋势。本研究为FCA(使用门控策略进行分析)提供了重要的新方案,从而发现了关于Caridea虾的GS的新信息,特别是关于Neotropical Synalpheus,它代表了Caridea次目的第二大类群。
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Patterns of genome size variation in caridean shrimps: new estimates for non-gambarelloides Synalpheus species.

Genome size (GS) or DNA nuclear content is considered a useful index for making inferences about evolutionary models and life history in animals, including taxonomic, biogeographical, and ecological scenarios. However, patterns of GS variation and their causes in crustaceans are still poorly understood. This study aimed to describe the GS of five Neotropical Synalpheus non-gambarelloides shrimps (S. apioceros, S. minus, S. brevicarpus, S. fritzmueller, and S. scaphoceris) and compare the C-values of all Caridea infraorder in terms of geography and phylogenetics. All animals were sampled in the coast of São Paulo State, Brazil, and GS was assessed by flow cytometry analysis (FCA). The C-values ranged from 7.89 pg in S. apioceros to 12.24 pg in S. scaphoceris. Caridean shrimps had higher GS than other Decapoda crustaceans. The results reveal a tendency of obtaining larger genomes in species with direct development in Synalpheus shrimps. In addition, a tendency of positive biogeographical (latitudinal) correlation with Caridea infraorder was also observed. This study provides remarkable and new protocol for FCA (using gating strategy for the analysis), which led to the discovery of new information regarding GS of caridean shrimps, especially for Neotropical Synalpheus, which represents the second-largest group in the Caridea infraorder.

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来源期刊
Genome
Genome 生物-生物工程与应用微生物
CiteScore
5.30
自引率
3.20%
发文量
42
审稿时长
6-12 weeks
期刊介绍: Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.
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