收紧腰带:多placophora的系统转录组学

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2021-06-03 DOI:10.1093/MOLLUS/EYAB019
J. Moles, T. J. Cunha, S. Lemer, David J. Combosch, Gonzalo Giribet
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引用次数: 3

摘要

已经使用形态学、传统Sanger标记和有丝分裂基因组学研究了软体动物纲聚lacphora(几丁质)内的系统发育关系,但迄今为止,还没有使用转录组和全基因组数据进行分析。在这里,我们利用转录组的力量来研究几丁质的系统发育,以测试目前的分类方案和Callochitonidae的位置。Callochitoniadae是一个家族,由于过去的研究结果相互矛盾,其系统发育位置和分类归属尚不确定。使用具有不同分类单元占用阈值的多个数据矩阵和推理方法,包括级联和基于聚结的方法,我们发现了壳虫系统发育的一致性解决方案。我们的结果支持了鳞翅目、Chitonida目和Callochitonida目的系统,后两者是姐妹群。该决议与最近的有丝分裂基因组结果一致,并否定了Callochiton作为几丁质酶成员的地位。
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Tightening the girdle: phylotranscriptomics of Polyplacophora
The phylogenetic relationships within the molluscan class Polyplacophora (chitons) have been studied using morphology, traditional Sanger markers and mitogenomics, but, to date, no analysis has been carried out using transcriptomic and genome-wide data. Here, we leverage the power of transcriptomes to investigate the chiton phylogeny to test current classification schemes and the position of Callochitonidae, a family whose phylogenetic position and taxonomic assignation are uncertain because of conflicting results from past studies. Using multiple data matrices with different taxon occupancy thresholds and inference methods, including both concatenated and coalescence-based approaches, we find a consistent resolution of the chiton phylogeny. Our results support a system with the orders Lepidopleurida, Chitonida and Callochitonida, with the latter two as sister groups. This resolution is compatible with recent mitogenomic results and rejects the position of Callochiton as a member of Chitonina.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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