利用线粒体DNA条形码研究黑斑鲤和鲤形鲤的分子多样性

IF 1.5 4区 农林科学 Q3 FISHERIES Turkish Journal of Fisheries and Aquatic Sciences Pub Date : 2022-09-13 DOI:10.4194/trjfas20576
Sibel Doğan Barata, M. Dorucu, N. Sağlam, M. Gurses, O. Otlu
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引用次数: 2

摘要

双口吸虫包括广泛而多样的普通双口吸虫。双口虫幼虫阶段是重要的病原体,可能对天然鱼类和水产养殖种群产生严重影响。双口吸虫是最常见的吸虫物种之一,以鱼类为第二中间宿主,通过在眼睛中沉淀形成白内障,对鱼类的福利产生负面影响。本研究基于线粒体COX1序列数据,首次确定了土耳其鲤鱼和羊肚鱼中双口虫的分子特征。根据形态学和COX1序列数据创建的系统发育树,将双口菌样品确定为铲状双口菌。根据爆破分析结果,序列结果与斑点草的匹配率约为98-100%。根据定义,这种寄生虫在土耳其有三种不同的单倍型。作为对GenBank中总共162个分离株进行单倍型分析的结果,并在本研究中获得,确定了40个多态性区域和58个单倍型。这个单倍型网络排列在一个星形结构内,具有一个主要的中心单倍型。这表明,匙形藻物种内部的变异性相当高。该寄生虫在C.carpio中的平均丰度、平均强度和流行率分别为8.29(5.80-11.24)、10.91±9.37(1-39)和76%。在昆布拉,平均丰度、平均强度和患病率分别为11.54(10.16-12.92)、14.07±16.59(1-67)和82%。
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Molecular Diversity of Diplostomum spathaceum (Digenea: Diplostomidae) on the Capoeta umbla and Cyprinus carpio (Cypriniformes) Using Mitochondrial DNA Barcode
Diplostomid trematodes (Digenea) include a wide and diverse group of common digeneans. Diplostomid larval stages are significant pathogens that may exert grave effects on both natural fish and aquaculture populations. Diplostomum species, which use fish as a second intermediate host, is one of the most common trematode species, which affects the fish welfare negatively with the formation of cataracts by settling in the eye. This study is determined the molecular characterization of Diplostomum parasite in Cyprinus carpio and Capoeta umbla for the first time from Turkey, based on the mitochondrial COX1 sequence data. Diplostomum samples were determined as Diplostomum spathaceum according to the phylogenetic trees created in the light of the morphological and COX1 sequence data. Sequence results matched ~98-100% with D. spathaceum as a result of blast analysis. It was defined that this parasite was represented by three different haplotypes in Turkey. As a result of haplotype analysis performed on a total of 162 isolates in GenBank and obtained in this study, 40 polymorphic regions and 58 haplotypes were determined. This haplotype network had arranged within a star-like configuration with a main central haplotype. This shows that the variation within D. spathaceum species is quite high. The mean abundance, mean intensity, and prevalence of the parasite in C. carpio were 8.29 (5.80-11.24), 10.91±9.37 (1-39), and 76%, respectively. In the C umbla, mean abundance, mean intensity, and prevalence were calculated as 11.54 (10.16-12.92), 14.07±16.59 (1-67), and 82%, respectively.
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来源期刊
Turkish Journal of Fisheries and Aquatic Sciences
Turkish Journal of Fisheries and Aquatic Sciences FISHERIES-MARINE & FRESHWATER BIOLOGY
CiteScore
3.10
自引率
0.00%
发文量
43
审稿时长
3 months
期刊介绍: Turkish Journal of Fisheries and Aquatic Sciences" (TrJFAS) is a refereed academic journal has been published by Central Fisheries Research Institute of Turkey and Japan International Cooperation Agency (JICA), and published in English. It aims to address research and needs of all working and studying within the many varied areas of fisheries and aquatic sciences. The Journal publishes English language original research papers, critical review articles, short communications and technical notes on applied or scientific research relevant to freshwater, brackish and marine environments. TrJFAS was published biannually (April & November) between 2001 and 2009. A great number of manuscripts have been submitted to the journal for review from acceptance of the SCI index. Thereby, the journal has been published quarterly (March, June, September and December) from 2010 to 2017. The journal will be published monthly in 2018.
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