Sibel Doğan Barata, M. Dorucu, N. Sağlam, M. Gurses, O. Otlu
{"title":"利用线粒体DNA条形码研究黑斑鲤和鲤形鲤的分子多样性","authors":"Sibel Doğan Barata, M. Dorucu, N. Sağlam, M. Gurses, O. Otlu","doi":"10.4194/trjfas20576","DOIUrl":null,"url":null,"abstract":"Diplostomid trematodes (Digenea) include a wide and diverse group of common digeneans. Diplostomid larval stages are significant pathogens that may exert grave effects on both natural fish and aquaculture populations. Diplostomum species, which use fish as a second intermediate host, is one of the most common trematode species, which affects the fish welfare negatively with the formation of cataracts by settling in the eye. This study is determined the molecular characterization of Diplostomum parasite in Cyprinus carpio and Capoeta umbla for the first time from Turkey, based on the mitochondrial COX1 sequence data. Diplostomum samples were determined as Diplostomum spathaceum according to the phylogenetic trees created in the light of the morphological and COX1 sequence data. Sequence results matched ~98-100% with D. spathaceum as a result of blast analysis. It was defined that this parasite was represented by three different haplotypes in Turkey. As a result of haplotype analysis performed on a total of 162 isolates in GenBank and obtained in this study, 40 polymorphic regions and 58 haplotypes were determined. This haplotype network had arranged within a star-like configuration with a main central haplotype. This shows that the variation within D. spathaceum species is quite high. The mean abundance, mean intensity, and prevalence of the parasite in C. carpio were 8.29 (5.80-11.24), 10.91±9.37 (1-39), and 76%, respectively. In the C umbla, mean abundance, mean intensity, and prevalence were calculated as 11.54 (10.16-12.92), 14.07±16.59 (1-67), and 82%, respectively.","PeriodicalId":23978,"journal":{"name":"Turkish Journal of Fisheries and Aquatic Sciences","volume":" ","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2022-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Molecular Diversity of Diplostomum spathaceum (Digenea: Diplostomidae) on the Capoeta umbla and Cyprinus carpio (Cypriniformes) Using Mitochondrial DNA Barcode\",\"authors\":\"Sibel Doğan Barata, M. Dorucu, N. Sağlam, M. Gurses, O. Otlu\",\"doi\":\"10.4194/trjfas20576\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Diplostomid trematodes (Digenea) include a wide and diverse group of common digeneans. Diplostomid larval stages are significant pathogens that may exert grave effects on both natural fish and aquaculture populations. Diplostomum species, which use fish as a second intermediate host, is one of the most common trematode species, which affects the fish welfare negatively with the formation of cataracts by settling in the eye. This study is determined the molecular characterization of Diplostomum parasite in Cyprinus carpio and Capoeta umbla for the first time from Turkey, based on the mitochondrial COX1 sequence data. Diplostomum samples were determined as Diplostomum spathaceum according to the phylogenetic trees created in the light of the morphological and COX1 sequence data. Sequence results matched ~98-100% with D. spathaceum as a result of blast analysis. It was defined that this parasite was represented by three different haplotypes in Turkey. As a result of haplotype analysis performed on a total of 162 isolates in GenBank and obtained in this study, 40 polymorphic regions and 58 haplotypes were determined. This haplotype network had arranged within a star-like configuration with a main central haplotype. This shows that the variation within D. spathaceum species is quite high. The mean abundance, mean intensity, and prevalence of the parasite in C. carpio were 8.29 (5.80-11.24), 10.91±9.37 (1-39), and 76%, respectively. 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Molecular Diversity of Diplostomum spathaceum (Digenea: Diplostomidae) on the Capoeta umbla and Cyprinus carpio (Cypriniformes) Using Mitochondrial DNA Barcode
Diplostomid trematodes (Digenea) include a wide and diverse group of common digeneans. Diplostomid larval stages are significant pathogens that may exert grave effects on both natural fish and aquaculture populations. Diplostomum species, which use fish as a second intermediate host, is one of the most common trematode species, which affects the fish welfare negatively with the formation of cataracts by settling in the eye. This study is determined the molecular characterization of Diplostomum parasite in Cyprinus carpio and Capoeta umbla for the first time from Turkey, based on the mitochondrial COX1 sequence data. Diplostomum samples were determined as Diplostomum spathaceum according to the phylogenetic trees created in the light of the morphological and COX1 sequence data. Sequence results matched ~98-100% with D. spathaceum as a result of blast analysis. It was defined that this parasite was represented by three different haplotypes in Turkey. As a result of haplotype analysis performed on a total of 162 isolates in GenBank and obtained in this study, 40 polymorphic regions and 58 haplotypes were determined. This haplotype network had arranged within a star-like configuration with a main central haplotype. This shows that the variation within D. spathaceum species is quite high. The mean abundance, mean intensity, and prevalence of the parasite in C. carpio were 8.29 (5.80-11.24), 10.91±9.37 (1-39), and 76%, respectively. In the C umbla, mean abundance, mean intensity, and prevalence were calculated as 11.54 (10.16-12.92), 14.07±16.59 (1-67), and 82%, respectively.
期刊介绍:
Turkish Journal of Fisheries and Aquatic Sciences" (TrJFAS) is a refereed academic journal has been published by Central Fisheries Research Institute of Turkey and Japan International Cooperation Agency (JICA), and published in English.
It aims to address research and needs of all working and studying within the many varied areas of fisheries and aquatic sciences.
The Journal publishes English language original research papers, critical review articles, short communications and technical notes on applied or scientific research relevant to freshwater, brackish and marine environments.
TrJFAS was published biannually (April & November) between 2001 and 2009. A great number of manuscripts have been submitted to the journal for review from acceptance of the SCI index. Thereby, the journal has been published quarterly (March, June, September and December) from 2010 to 2017. The journal will be published monthly in 2018.