森肠杆菌AYS9的基因组评估:一种潜在的促进植物生长的抗旱根瘤菌

IF 2 Q3 SOIL SCIENCE Spanish Journal of Soil Science Pub Date : 2023-06-08 DOI:10.3389/sjss.2023.11302
A. Fadiji, A. Ayangbenro, O. Babalola
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引用次数: 0

摘要

干旱胁迫对农业生产构成严重威胁。最近的研究表明,用于减轻其对植物生产影响的大多数化学方法对人类和环境构成了严重威胁。因此,对生态友好解决方案的需求增加,以确保世界粮食供应的安全。在这种情况下,植物生长促进根际细菌(PGPR)处理可能是有利的。在这方面,森肠杆菌是一种很有前途的根际细菌。然而,关于与高粱根际土壤相关的E.mori基因组分析的信息尚未得到广泛研究。在本研究中,我们对从高粱植物中分离的E.mori AYS9的功能属性进行了基因组研究,并评估了其耐旱性和促进植物生长的潜力。结果表明,AYS9具有一定的抗旱性和促进植株生长的潜力。全基因组测序(WGS)结果显示,该基因组产生4852175bp的序列读数,平均读取长度为151bp,基因组大小为1845357bp,67个tRNA,3个rRNA,G+C含量为55.5%。基因组中鉴定的功能基因与磷酸溶解、铁转运、激素调节、固氮,以及对氧化和渗透胁迫的抵抗力。此外,在AYS9基因组中发现了支持细菌对植物病原体和非生物胁迫的生物控制特性的次级代谢产物,如好氧菌素型非核糖体肽铁载体、Stewartan型ladderane和Colicin型NRPS。然而,我们的研究结果表明,由细菌基因组中预测的新基因介导的复杂代谢途径可能为未来理解根际生物学以及这些基因在植物发育和健康中发挥的不同作用提供遗传基础。
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Genomic Assessment of Enterobacter mori AYS9: A Potential Plant Growth-Promoting Drought-Resistant Rhizobacteria
Drought stress poses a serious danger to agricultural production. Recent studies have revealed that most of the chemical methods used in the mitigation of its effects on plant production pose a serious threat to humans and the environment. Therefore, the demand for ecologically friendly solutions to ensure the security of the world’s food supply has increased as a result. Plant growth-promoting rhizobacteria (PGPR) treatment may be advantageous in this situation. Enterobacter mori is a promising rhizobacteria in this regard. However, information on the genome analysis of E. mori linked to the rhizosphere soil of the sorghum plant has not been extensively studied. In this study, we present a genomic lens into functional attributes of E. mori AYS9 isolated from sorghum plants, as well as assess its drought tolerance and plant growth-promoting potentials. Our results showed the drought tolerance and plant growth-promoting potentials of the AYS9. Whole genome sequencing (WGS) results revealed that the genome yielded 4,852,175 bp sequence reads, an average read length of 151 bp, 1,845,357 bp genome size, 67 tRNAs, 3 rRNAs, and a G + C content of 55.5%. The functional genes identified in the genome were linked to processes including phosphate solubilization, iron transport, hormone regulation, nitrogen fixation, and resistance to oxidative and osmotic stress. Also, secondary metabolites supporting bacterial biocontrol properties against phytopathogens, and abiotic stress such as aerobactin-type non-ribosomal peptide siderophore, Stewartan-type ladderane, and Colicin type NRPS were discovered in the AYS9 genome. Our findings however establish that the intricate metabolic pathways mediated by the projected new genes in the bacterial genome may offer a genetic foundation for future understanding of rhizosphere biology and the diverse roles that these genes play in plant development and health.
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来源期刊
CiteScore
2.20
自引率
0.00%
发文量
13
期刊介绍: The Spanish Journal of Soil Science (SJSS) is a peer-reviewed journal with open access for the publication of Soil Science research, which is published every four months. This publication welcomes works from all parts of the world and different geographic areas. It aims to publish original, innovative, and high-quality scientific papers related to field and laboratory research on all basic and applied aspects of Soil Science. The journal is also interested in interdisciplinary studies linked to soil research, short communications presenting new findings and applications, and invited state of art reviews. The journal focuses on all the different areas of Soil Science represented by the Spanish Society of Soil Science: soil genesis, morphology and micromorphology, physics, chemistry, biology, mineralogy, biochemistry and its functions, classification, survey, and soil information systems; soil fertility and plant nutrition, hydrology and geomorphology; soil evaluation and land use planning; soil protection and conservation; soil degradation and remediation; soil quality; soil-plant relationships; soils and land use change; sustainability of ecosystems; soils and environmental quality; methods of soil analysis; pedometrics; new techniques and soil education. Other fields with growing interest include: digital soil mapping, soil nanotechnology, the modelling of biological and biochemical processes, mechanisms and processes responsible for the mobilization and immobilization of nutrients, organic matter stabilization, biogeochemical nutrient cycles, the influence of climatic change on soil processes and soil-plant relationships, carbon sequestration, and the role of soils in climatic change and ecological and environmental processes.
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