M. Rodríguez Martínez, Angelyn R. Lao, Leda Torres
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This Research Topic includes six original research articles, one perspective article and one technology and code article, with the participation of 41 authors from 10 countries: Colombia, France, Germany, Greece, Ireland, Mexico, Netherlands, Philippines, Switzerland, and the United Kingdom. We have a total of 7,493 views as of 9 January 2023. Overall, we were very pleased by the quality of the submissions we received in response to the call. In the Model Integration area, Connolly and colleagues presented a methodology for pandemic modelling motivated by the current COVID-19 outbreak with the title “From Epidemic to Pandemic Modelling” (Connolly et al.) Pandemicmodels are important to design effective controlmeasures, such as travel or quarantine restrictions. Here, the authors proposed a methodology for systematically extending epidemic models to multilevel and multiscale spatiotemporal pandemic models that integrate information about geography and travel connections. PetriNuts, a publicly available webbased platform, supports model construction, simulation, and output visualization. It also enables deterministic, stochastic and hybrid simulation, as well as structural and behavioural analysis. Flores-Garza and co-authors published “Mathematical Model of the Immunopathological Progression of Tuberculosis,” an elegant model to understand tuberculosis, a worldwide persistent infectious disease caused by the bacteriaMycobacterium tuberculosis (Flores-Garza et al.). Amechanistic mathematical model integrates multiple in vivo and in vitro data from immunohistochemical, serological, molecular biology, and cell count assays. Ordinary differential equations (ODEs) were used to describe the regulatory interplay between the cell phenotypic variation and the inflammatory microenvironment. The model can predict disease outcomes for different mouse genotypes and simulate the interaction between host and pathogen genotypes. In doing so, it provides a powerful tool to test the effect of host-pathogen interaction alterations on infection outcomes. These in silico experiments can lead to future experimentation and help reduce the number of in vivo experiments. OPEN ACCESS","PeriodicalId":73109,"journal":{"name":"Frontiers in systems biology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2023-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Editorial: Systems biology, women in science 2021/22: Data and model integration\",\"authors\":\"M. Rodríguez Martínez, Angelyn R. Lao, Leda Torres\",\"doi\":\"10.3389/fsysb.2023.1134055\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Despite recent progress in encouraging and retaining talented women in science, technology, engineering, and mathematics (STEM) careers, women still face stiff penalties in the academic world. Research shows that women receive less funding, awards, teaching scores, invitations to speak at conferences, and citations than male colleagues (Berggren et al., 2022; Ainslie, 2022). To facilitate the success of our female colleagues and trainees in academia, this Research Topic aimed to highlight the work of women in Systems Biology, with a special focus on showcasing research on Data and Model Integration. It spans advances in theory, methodology, and experimental work with applications to biologically compelling problems. This Research Topic includes six original research articles, one perspective article and one technology and code article, with the participation of 41 authors from 10 countries: Colombia, France, Germany, Greece, Ireland, Mexico, Netherlands, Philippines, Switzerland, and the United Kingdom. We have a total of 7,493 views as of 9 January 2023. Overall, we were very pleased by the quality of the submissions we received in response to the call. In the Model Integration area, Connolly and colleagues presented a methodology for pandemic modelling motivated by the current COVID-19 outbreak with the title “From Epidemic to Pandemic Modelling” (Connolly et al.) Pandemicmodels are important to design effective controlmeasures, such as travel or quarantine restrictions. Here, the authors proposed a methodology for systematically extending epidemic models to multilevel and multiscale spatiotemporal pandemic models that integrate information about geography and travel connections. PetriNuts, a publicly available webbased platform, supports model construction, simulation, and output visualization. It also enables deterministic, stochastic and hybrid simulation, as well as structural and behavioural analysis. Flores-Garza and co-authors published “Mathematical Model of the Immunopathological Progression of Tuberculosis,” an elegant model to understand tuberculosis, a worldwide persistent infectious disease caused by the bacteriaMycobacterium tuberculosis (Flores-Garza et al.). Amechanistic mathematical model integrates multiple in vivo and in vitro data from immunohistochemical, serological, molecular biology, and cell count assays. Ordinary differential equations (ODEs) were used to describe the regulatory interplay between the cell phenotypic variation and the inflammatory microenvironment. The model can predict disease outcomes for different mouse genotypes and simulate the interaction between host and pathogen genotypes. In doing so, it provides a powerful tool to test the effect of host-pathogen interaction alterations on infection outcomes. These in silico experiments can lead to future experimentation and help reduce the number of in vivo experiments. 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引用次数: 0
摘要
尽管最近在鼓励和留住科学、技术、工程和数学(STEM)领域的天才女性方面取得了进展,但女性在学术界仍然面临着严厉的惩罚。研究表明,与男性同事相比,女性获得的资金、奖项、教学成绩、会议演讲邀请和引文更少(Berggren et al.,2022;安斯利,2022)。为了促进我们的女性同事和学员在学术界取得成功,本研究主题旨在突出女性在系统生物学方面的工作,特别侧重于展示数据和模型集成方面的研究。它涵盖了理论、方法和实验工作的进步,并应用于生物学上令人信服的问题。本研究主题包括六篇原创研究文章、一篇观点文章和一篇技术与代码文章,来自哥伦比亚、法国、德国、希腊、爱尔兰、墨西哥、荷兰、菲律宾、瑞士和英国10个国家的41位作者参与了本研究。截至2023年1月9日,我们共有7493次浏览。总的来说,我们对响应号召提交的材料的质量感到非常满意。在模型集成领域,Connolly及其同事提出了一种受当前新冠肺炎疫情驱动的流行病建模方法,标题为“从流行病到流行病建模”(Connolly等人)流行病模型对于设计有效的控制措施(如旅行或隔离限制)很重要。在这里,作者提出了一种方法,将流行病模型系统地扩展到多层次和多尺度的时空流行病模型,该模型集成了有关地理和旅行联系的信息。PetriNuts是一个公开的基于网络的平台,支持模型构建、模拟和输出可视化。它还支持确定性、随机性和混合模拟,以及结构和行为分析。Flores Garza和合著者发表了《结核病免疫病理学进展的数学模型》,这是一个了解结核病的优雅模型,结核病是一种由细菌引起的全球持久性传染病分枝杆菌(Flores Garzaet al.),分子生物学和细胞计数测定。常微分方程(ODEs)用于描述细胞表型变异和炎症微环境之间的调节相互作用。该模型可以预测不同基因型小鼠的疾病结果,并模拟宿主和病原体基因型之间的相互作用。通过这样做,它提供了一个强大的工具来测试宿主-病原体相互作用改变对感染结果的影响。这些计算机实验可以引导未来的实验,并有助于减少体内实验的数量。开放存取
Editorial: Systems biology, women in science 2021/22: Data and model integration
Despite recent progress in encouraging and retaining talented women in science, technology, engineering, and mathematics (STEM) careers, women still face stiff penalties in the academic world. Research shows that women receive less funding, awards, teaching scores, invitations to speak at conferences, and citations than male colleagues (Berggren et al., 2022; Ainslie, 2022). To facilitate the success of our female colleagues and trainees in academia, this Research Topic aimed to highlight the work of women in Systems Biology, with a special focus on showcasing research on Data and Model Integration. It spans advances in theory, methodology, and experimental work with applications to biologically compelling problems. This Research Topic includes six original research articles, one perspective article and one technology and code article, with the participation of 41 authors from 10 countries: Colombia, France, Germany, Greece, Ireland, Mexico, Netherlands, Philippines, Switzerland, and the United Kingdom. We have a total of 7,493 views as of 9 January 2023. Overall, we were very pleased by the quality of the submissions we received in response to the call. In the Model Integration area, Connolly and colleagues presented a methodology for pandemic modelling motivated by the current COVID-19 outbreak with the title “From Epidemic to Pandemic Modelling” (Connolly et al.) Pandemicmodels are important to design effective controlmeasures, such as travel or quarantine restrictions. Here, the authors proposed a methodology for systematically extending epidemic models to multilevel and multiscale spatiotemporal pandemic models that integrate information about geography and travel connections. PetriNuts, a publicly available webbased platform, supports model construction, simulation, and output visualization. It also enables deterministic, stochastic and hybrid simulation, as well as structural and behavioural analysis. Flores-Garza and co-authors published “Mathematical Model of the Immunopathological Progression of Tuberculosis,” an elegant model to understand tuberculosis, a worldwide persistent infectious disease caused by the bacteriaMycobacterium tuberculosis (Flores-Garza et al.). Amechanistic mathematical model integrates multiple in vivo and in vitro data from immunohistochemical, serological, molecular biology, and cell count assays. Ordinary differential equations (ODEs) were used to describe the regulatory interplay between the cell phenotypic variation and the inflammatory microenvironment. The model can predict disease outcomes for different mouse genotypes and simulate the interaction between host and pathogen genotypes. In doing so, it provides a powerful tool to test the effect of host-pathogen interaction alterations on infection outcomes. These in silico experiments can lead to future experimentation and help reduce the number of in vivo experiments. OPEN ACCESS