{"title":"独立培养水蛭属(Hirudinaria bpling Phillips)的eDNA作为生物多样性评估的工具","authors":"","doi":"10.26757/pjsb2019b13005","DOIUrl":null,"url":null,"abstract":"Recent interest in the use of leeches as a source of eDNA by obtaining and analyzing traces of its last blood meal has proven noteworthy as a tool in screening biodiversity. As the method is fairly new and has relatively unexplored benefits, its assessment as a tool in such fields as ecology and biotechnology prompts further studies. This study was conducted to provide an alternative to collecting samples in poorly-explored areas or in areas where collection is very difficult, if not impossible. Using leeches collected from Angadanan, Isabela, DNA was extracted and cytochrome oxidase I (COI) gene was amplified using conventional PCR. Gene sequences from resulting amplicons were matched with similar sequences using BLASTn, where prey sequences were narrowed down to organisms with the highest match of no less than 85%. Highest score of similarities were obtained and species identified included Cyprinus carpio L. 1758, Homo sapiens L., 1758, Bos taurus L., 1758, Bubalus bubalis carabanensis L.S. Castillo, 1998, Equus caballus L., 1758, and Canis familiaris L., 1758. These results demonstrate that using leech-extracted blood meal may be a successful tool in screening vertebrate biodiversity.","PeriodicalId":37378,"journal":{"name":"Philippine Journal of Systematic Biology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"eDNA from culture-independent Hirudinaria bpling Phillips 2012 (Annelida: Hirundinidae) as a tool for biodiversity assessment\",\"authors\":\"\",\"doi\":\"10.26757/pjsb2019b13005\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Recent interest in the use of leeches as a source of eDNA by obtaining and analyzing traces of its last blood meal has proven noteworthy as a tool in screening biodiversity. As the method is fairly new and has relatively unexplored benefits, its assessment as a tool in such fields as ecology and biotechnology prompts further studies. This study was conducted to provide an alternative to collecting samples in poorly-explored areas or in areas where collection is very difficult, if not impossible. Using leeches collected from Angadanan, Isabela, DNA was extracted and cytochrome oxidase I (COI) gene was amplified using conventional PCR. Gene sequences from resulting amplicons were matched with similar sequences using BLASTn, where prey sequences were narrowed down to organisms with the highest match of no less than 85%. Highest score of similarities were obtained and species identified included Cyprinus carpio L. 1758, Homo sapiens L., 1758, Bos taurus L., 1758, Bubalus bubalis carabanensis L.S. Castillo, 1998, Equus caballus L., 1758, and Canis familiaris L., 1758. These results demonstrate that using leech-extracted blood meal may be a successful tool in screening vertebrate biodiversity.\",\"PeriodicalId\":37378,\"journal\":{\"name\":\"Philippine Journal of Systematic Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-05-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Philippine Journal of Systematic Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.26757/pjsb2019b13005\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Environmental Science\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Philippine Journal of Systematic Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.26757/pjsb2019b13005","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Environmental Science","Score":null,"Total":0}
eDNA from culture-independent Hirudinaria bpling Phillips 2012 (Annelida: Hirundinidae) as a tool for biodiversity assessment
Recent interest in the use of leeches as a source of eDNA by obtaining and analyzing traces of its last blood meal has proven noteworthy as a tool in screening biodiversity. As the method is fairly new and has relatively unexplored benefits, its assessment as a tool in such fields as ecology and biotechnology prompts further studies. This study was conducted to provide an alternative to collecting samples in poorly-explored areas or in areas where collection is very difficult, if not impossible. Using leeches collected from Angadanan, Isabela, DNA was extracted and cytochrome oxidase I (COI) gene was amplified using conventional PCR. Gene sequences from resulting amplicons were matched with similar sequences using BLASTn, where prey sequences were narrowed down to organisms with the highest match of no less than 85%. Highest score of similarities were obtained and species identified included Cyprinus carpio L. 1758, Homo sapiens L., 1758, Bos taurus L., 1758, Bubalus bubalis carabanensis L.S. Castillo, 1998, Equus caballus L., 1758, and Canis familiaris L., 1758. These results demonstrate that using leech-extracted blood meal may be a successful tool in screening vertebrate biodiversity.
期刊介绍:
The Philippine Journal of Systematic Biology (Print ISSN: 1908-6865; Online ISSN: 2508-0342) is an annual, peer-reviewed journal in English that publishes high quality reports of original research and reviews in the field of Taxonomy & Systematics, Ecology and Conservation Biology. The PJSB is a CHED recognized journal under CHED CMO 50 series of 2017. It is also included in the Clavariate Analysis (formerly a subsidiary of Thomson Reuters) Master Journal List under Zoological Record, BIOSIS Previews and Biological Abstracts.The PJSB is the official publication of the Association of Systematic Biologists of the Philippines (SEC Registration: Association of Philippine Taxonomists, Inc.). The organization financially supports the journal and all its endeavors. The journal aims to build up quality information on animal, plant and microbial diversity in the Philippines. Articles dealing with original research or reviews in Zoological, Botanical or Microbial Systematics, Ecology and Conservation Biology are welcome. Authors are advised to consult a recent issue of PJSB for the current format and style. All manuscripts are reviewed by at least two qualified referees.