独立培养水蛭属(Hirudinaria bpling Phillips)的eDNA作为生物多样性评估的工具

Q3 Environmental Science Philippine Journal of Systematic Biology Pub Date : 2020-05-25 DOI:10.26757/pjsb2019b13005
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引用次数: 0

摘要

最近,通过获取和分析水蛭最后一次血粉的痕迹,人们对使用水蛭作为eDNA来源的兴趣已被证明是筛查生物多样性的一种工具。由于该方法是一种相当新的方法,并且具有相对未被探索的好处,因此作为生态学和生物技术等领域的工具进行评估促使人们进行进一步的研究。进行这项研究是为了提供一种替代方案,以取代在勘探不足的地区或在采集非常困难(如果不是不可能的话)的地区采集样本。利用从安哥拉和伊莎贝拉采集的水蛭提取DNA,并用常规PCR扩增细胞色素氧化酶I(COI)基因。使用BLASTn将所得扩增子的基因序列与类似序列进行匹配,其中猎物序列被缩小到具有不低于85%的最高匹配的生物体。相似性得分最高,已鉴定的物种包括鲤鱼(Cyprinus carpio L.)1758、智人(Homo sapiens L.),1758、牛头犬(Bos taurus L.),17158、布巴鲁(Bubalus bubalis carabanensis L.S.Castillo),1998、马(Equus caballus L.)、和家犬(Canis familyaris L.)。这些结果表明,使用水蛭提取的血粉可能是筛选脊椎动物生物多样性的一种成功工具。
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eDNA from culture-independent Hirudinaria bpling Phillips 2012 (Annelida: Hirundinidae) as a tool for biodiversity assessment
Recent interest in the use of leeches as a source of eDNA by obtaining and analyzing traces of its last blood meal has proven noteworthy as a tool in screening biodiversity. As the method is fairly new and has relatively unexplored benefits, its assessment as a tool in such fields as ecology and biotechnology prompts further studies. This study was conducted to provide an alternative to collecting samples in poorly-explored areas or in areas where collection is very difficult, if not impossible. Using leeches collected from Angadanan, Isabela, DNA was extracted and cytochrome oxidase I (COI) gene was amplified using conventional PCR. Gene sequences from resulting amplicons were matched with similar sequences using BLASTn, where prey sequences were narrowed down to organisms with the highest match of no less than 85%. Highest score of similarities were obtained and species identified included Cyprinus carpio L. 1758, Homo sapiens L., 1758, Bos taurus L., 1758, Bubalus bubalis carabanensis L.S. Castillo, 1998, Equus caballus L., 1758, and Canis familiaris L., 1758. These results demonstrate that using leech-extracted blood meal may be a successful tool in screening vertebrate biodiversity.
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来源期刊
Philippine Journal of Systematic Biology
Philippine Journal of Systematic Biology Environmental Science-Ecology
CiteScore
1.50
自引率
0.00%
发文量
0
期刊介绍: The Philippine Journal of Systematic Biology (Print ISSN: 1908-6865; Online ISSN: 2508-0342) is an annual, peer-reviewed journal in English that publishes high quality reports of original research and reviews in the field of Taxonomy & Systematics, Ecology and Conservation Biology. The PJSB is a CHED recognized journal under CHED CMO 50 series of 2017. It is also included in the Clavariate Analysis (formerly a subsidiary of Thomson Reuters) Master Journal List under Zoological Record, BIOSIS Previews and Biological Abstracts.The PJSB is the official publication of the Association of Systematic Biologists of the Philippines (SEC Registration: Association of Philippine Taxonomists, Inc.). The organization financially supports the journal and all its endeavors. The journal aims to build up quality information on animal, plant and microbial diversity in the Philippines. Articles dealing with original research or reviews in Zoological, Botanical or Microbial Systematics, Ecology and Conservation Biology are welcome. Authors are advised to consult a recent issue of PJSB for the current format and style. All manuscripts are reviewed by at least two qualified referees.
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