从菲律宾和越南收集的材料湿室中获得的半球黏菌标本18s rDNA变异的分布

Q3 Environmental Science Philippine Journal of Systematic Biology Pub Date : 2020-05-11 DOI:10.26757/pjsb2019b13003
{"title":"从菲律宾和越南收集的材料湿室中获得的半球黏菌标本18s rDNA变异的分布","authors":"","doi":"10.26757/pjsb2019b13003","DOIUrl":null,"url":null,"abstract":"Since there are only limited biogeographic studies of myxomycetes in Southeast Asia, this study was conducted to assess the molecular diversity of Diderma hemisphaericum, a cosmopolitan myxomycetes species that abundantly occurs in most moist chamber collections in tropical Southeast Asia. Specimens that contain D. hemisphaericum were gathered from various parts of the Philippines: (i) Los Banos, (ii) Calauan, (iii) Basud, (iv) Isarog and (v) Malilipot; and Vietnam: (i) Thai Nguyen (ii) Ha Noi and (iii) Da Nang. Using modern molecular techniques, the common barcode nuclear marker 18S rDNA for myxomycetes was targeted for the 50 specimen used in this study. A total of 27 ribotypes (11 from the Philippines and 16 from Vietnam) were obtained. The Mantel test showed that genetic differentiation among ribotypes is not correlated with geographic distances. The FST index (0.083) indicates high genetic intermixing between the Philippines and Vietnam. Hence, it seems that the variation across regional scale gene pool is not directly influenced by geographic isolation but rather by environmental selection.","PeriodicalId":37378,"journal":{"name":"Philippine Journal of Systematic Biology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-05-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":"{\"title\":\"Distribution of 18s rDNA variants of Diderma hemisphaericum (Myxomycota) specimens obtained from moist chambers of materials collected in the Philippines and Vietnam\",\"authors\":\"\",\"doi\":\"10.26757/pjsb2019b13003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Since there are only limited biogeographic studies of myxomycetes in Southeast Asia, this study was conducted to assess the molecular diversity of Diderma hemisphaericum, a cosmopolitan myxomycetes species that abundantly occurs in most moist chamber collections in tropical Southeast Asia. Specimens that contain D. hemisphaericum were gathered from various parts of the Philippines: (i) Los Banos, (ii) Calauan, (iii) Basud, (iv) Isarog and (v) Malilipot; and Vietnam: (i) Thai Nguyen (ii) Ha Noi and (iii) Da Nang. Using modern molecular techniques, the common barcode nuclear marker 18S rDNA for myxomycetes was targeted for the 50 specimen used in this study. A total of 27 ribotypes (11 from the Philippines and 16 from Vietnam) were obtained. The Mantel test showed that genetic differentiation among ribotypes is not correlated with geographic distances. The FST index (0.083) indicates high genetic intermixing between the Philippines and Vietnam. Hence, it seems that the variation across regional scale gene pool is not directly influenced by geographic isolation but rather by environmental selection.\",\"PeriodicalId\":37378,\"journal\":{\"name\":\"Philippine Journal of Systematic Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-05-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Philippine Journal of Systematic Biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.26757/pjsb2019b13003\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Environmental Science\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Philippine Journal of Systematic Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.26757/pjsb2019b13003","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Environmental Science","Score":null,"Total":0}
引用次数: 3

摘要

由于东南亚对黏菌门的生物地理学研究有限,因此本研究旨在评估半球形Diderma hemisphaerium的分子多样性,这是一种世界性的黏菌门物种,大量存在于热带东南亚大多数潮湿的室内群落中。从菲律宾各地采集了含有半球形D.aericum的标本:(i)Los Banos,(ii)Caluan,(iii)Basud,(iv)Isarog和(v)Malilipot;越南:(i)泰阮(ii)河内和(iii)岘港。利用现代分子技术,针对本研究中使用的50个样本,靶向粘霉菌的常见条形码核标记18S rDNA。共获得27种核糖类型(11种来自菲律宾,16种来自越南)。Mantel检验表明,核糖类型之间的遗传分化与地理距离无关。FST指数(0.083)表明菲律宾和越南之间存在高度的遗传混杂。因此,跨区域尺度的基因库变异似乎不受地理隔离的直接影响,而是受环境选择的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Distribution of 18s rDNA variants of Diderma hemisphaericum (Myxomycota) specimens obtained from moist chambers of materials collected in the Philippines and Vietnam
Since there are only limited biogeographic studies of myxomycetes in Southeast Asia, this study was conducted to assess the molecular diversity of Diderma hemisphaericum, a cosmopolitan myxomycetes species that abundantly occurs in most moist chamber collections in tropical Southeast Asia. Specimens that contain D. hemisphaericum were gathered from various parts of the Philippines: (i) Los Banos, (ii) Calauan, (iii) Basud, (iv) Isarog and (v) Malilipot; and Vietnam: (i) Thai Nguyen (ii) Ha Noi and (iii) Da Nang. Using modern molecular techniques, the common barcode nuclear marker 18S rDNA for myxomycetes was targeted for the 50 specimen used in this study. A total of 27 ribotypes (11 from the Philippines and 16 from Vietnam) were obtained. The Mantel test showed that genetic differentiation among ribotypes is not correlated with geographic distances. The FST index (0.083) indicates high genetic intermixing between the Philippines and Vietnam. Hence, it seems that the variation across regional scale gene pool is not directly influenced by geographic isolation but rather by environmental selection.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Philippine Journal of Systematic Biology
Philippine Journal of Systematic Biology Environmental Science-Ecology
CiteScore
1.50
自引率
0.00%
发文量
0
期刊介绍: The Philippine Journal of Systematic Biology (Print ISSN: 1908-6865; Online ISSN: 2508-0342) is an annual, peer-reviewed journal in English that publishes high quality reports of original research and reviews in the field of Taxonomy & Systematics, Ecology and Conservation Biology. The PJSB is a CHED recognized journal under CHED CMO 50 series of 2017. It is also included in the Clavariate Analysis (formerly a subsidiary of Thomson Reuters) Master Journal List under Zoological Record, BIOSIS Previews and Biological Abstracts.The PJSB is the official publication of the Association of Systematic Biologists of the Philippines (SEC Registration: Association of Philippine Taxonomists, Inc.). The organization financially supports the journal and all its endeavors. The journal aims to build up quality information on animal, plant and microbial diversity in the Philippines. Articles dealing with original research or reviews in Zoological, Botanical or Microbial Systematics, Ecology and Conservation Biology are welcome. Authors are advised to consult a recent issue of PJSB for the current format and style. All manuscripts are reviewed by at least two qualified referees.
期刊最新文献
First Report of the Scale Insect Family Conchaspididae and of Conchaspis angraeci Cockerell (Hemiptera: Coccomorpha) on Hoya spp. (Apocynaceae) in the Philippines Pachyrhynchus cebrem sp. nov.: A New Species of Easter Egg Weevil (Curculionidae: Entiminae: Pachyrhynchini) from Davao De Oro, the Philippines Good coral cover and high diversity of corals in non-MPA reefs of the Verde Island Passage as a basis for increased protection and conservation Earthworms Species Diversity and Populations in Initao-Libertad Protected Landscape and Seascape, Misamis Oriental, Philippines Morphometric Variation in Lepidogrammus cumingi and Dasylophus superciliosus from Greater Luzon, Philippines based on Museum Specimens
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1