伊拉克松露的分子鉴定及遗传多样性研究

Q4 Agricultural and Biological Sciences Journal of Phytology Pub Date : 2020-12-29 DOI:10.25081/jp.2020.v12.6599
A. A. Aish, S. Abdulmalek, T. A. Kareem, Lara B. Yasir, O. Matny
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引用次数: 2

摘要

本研究的目的是研究伊拉克松露物种的分子鉴定,更好地了解松露栖息地中心的遗传多样性。从伊拉克沙漠和当地市场收集了32个样本。根据果体的形态多样性和样品采集区域选择样品。ITS区测序结果显示,32份样本的主要优势属为Tirmania和Terfezia,其中pinoyi Tirmania 4种,claveryi Terfezia 28种。所有物种序列均已存入NCBI GenBank,并均有加入编号。采用邻接法建立系统发育树,对32份伊拉克松露样本ITS序列的遗传多样性进行了研究。结果表明,伊拉克松露样品具有较高的遗传多样性。系统发育研究表明,伊拉克松露与其他国家的参考序列聚在一起,作为一个进化支,代表了亚洲、非洲和欧洲三大洲。此外,我们在本研究中发现,T. pinoyi和T. claveryi松露的伊拉克序列在一个独特的聚类组中,与本研究中使用的任何参考序列不匹配。这是一个强有力的证据,证明伊拉克栖息地可能是T. pinoyi和T. claveryi松露中心多样性的起源。
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Molecular identification and genetic diversity study of the Iraqi truffles
The aim of this study is to investigate the molecular identification of the Iraqi truffles species and a better understanding of genetic diversity in the center of the truffles habitat. Thirty-two samples were collected from the Iraqi desert and local markets. Samples were chosen depending on the morphological diversity of the fruit body and sample collection area. Results of ITS region sequencing for the 32 samples showed two genuses Tirmania and Terfezia are the main dominant, 4 species of Tirmania pinoyi and 28 species of Terfezia claveryi. All species sequences were deposited in NCBI GenBank and all had accessions number. The neighbor-Joining method was used to generate a phylogenic tree to study the genetic diversity of the ITS sequences for the 32 Iraqi truffle samples. Results showed a high genetic diversity for the Iraqi truffles samples. The phylogenic study showed Iraqi truffles clustered with different groups as a clade with the reference sequences from other countries represent three continents Asia, Africa, and Europe. Also, we found in this study a unique cluster group for the Iraqi sequences for T. pinoyi and T. claveryi truffles cluster in one group and do not match with any reference sequences used in this study. This is a piece of strong evidence proofed the Iraqi habitat could be the origin of center diversity for the T. pinoyi and T. claveryi truffles.
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来源期刊
Journal of Phytology
Journal of Phytology Agricultural and Biological Sciences-Plant Science
CiteScore
1.40
自引率
0.00%
发文量
17
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