综合生物信息学分析确定扩张型心肌病关键基因及相关分子的潜在生物标志物

IF 0.9 4区 医学 Q4 CARDIAC & CARDIOVASCULAR SYSTEMS Cardiovascular Innovations and Applications Pub Date : 2023-04-27 DOI:10.15212/cvia.2023.0018
Yingrui Li, Jianlin Du, Bin Liu, Q. She
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引用次数: 0

摘要

背景:扩张型心肌病(DCM)是一种非缺血性心脏病,对全球健康造成巨大负担,但其潜在的分子机制仍知之甚少。方法:在R软件中进行加权基因共表达网络分析、基因差异表达分析、富集分析和LASSO模型构建。miRWalk 2.0和StarBase v2.0分别用于预测中枢基因的靶miRNA和circRNA。结果:鉴定出四个枢纽基因(COL3A1、COL1A2、LUM和THBS4),它们在纤维化途径中显著富集,包括细胞外基质、生物学过程以及TGF-β信号传导和局灶性粘附途径。LASSO模型准确地预测了DCM的发生。此外,还发现3种miRNA(hsa-let-7b-5p、hsa-let-72c-5p和hsa-miR-29b-3p)和30种circRNA(包括GIT2_hsa_circRNA10114、ANKRD52_hsa_circRNA9983和JARID2_hsa_2circRNA6618)与DCM相关。结论:生物信息学分析确定了可能与DCM高度相关的枢纽基因和相关分子。这些发现为改善诊断和药物治疗以预防DCM进展的潜在靶点提供了见解。
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Identifying Key Genes and Related Molecules as Potential Biomarkers in Human Dilated Cardiomyopathy by Comprehensive Bioinformatics Analysis
Background: Dilated cardiomyopathy (DCM) is a non-ischemic heart disease that poses a substantial global health burden, but its underlying molecular mechanisms remain poorly understood. Methods: Weighted gene co-expression network analysis, differential expression analysis of genes, enriched analysis and LASSO model construction were performed in R software. miRWalk 2.0 and StarBase v2.0 were used to predict the target miRNAs and circRNAs of hub genes, respectively. Results: Four hub genes (COL3A1, COL1A2, LUM and THBS4) were identified, which were significantly enriched in fibrosis pathways, including extracellular matrix, biological process, and the TGF beta signaling and focal adhesion pathways. The LASSO model accurately predicted the occurrence of DCM. Additionally, three miRNAs (hsa-let-7b-5p, hsa-let-7c-5p and hsa-miR-29b-3p) and 30 circRNAs (including GIT2_hsa_circRNA10114, ANKRD52_hsa_circRNA9983 and JARID2_hsa_circRNA6618) were found to be associated with DCM. Conclusion: Bioinformatics analysis identified hub genes and related molecules that may be highly associated with DCM. These findings provide insights into potential targets for improving diagnosis and pharmacological therapies to prevent DCM progression.
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来源期刊
Cardiovascular Innovations and Applications
Cardiovascular Innovations and Applications CARDIAC & CARDIOVASCULAR SYSTEMS-
CiteScore
0.80
自引率
20.00%
发文量
222
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