影响双基因检测人群基因组预测有效性的因素

IF 0.5 Q4 AGRICULTURAL ECONOMICS & POLICY Poljoprivreda Pub Date : 2020-06-23 DOI:10.18047/poljo.26.1.2
Vlatko Galić, M. Mazur, Domagoj Šimić, Zvonimir Zdunić, Antun Jambrović, Mirna Volenik, Andrija Brkić
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引用次数: 1

摘要

基因组预测的准确性(r_MP)受到许多因素的影响,如性状遗传力、训练群体的大小和结构以及标记的数量。本研究的目的是研究玉米(Zea mays L.)IBM群体在两种种植密度下的穗高和株高与r_MP的相关因素。计算训练和验证群体之间的遗传相关性。观察到高遗传力估计值和性状之间的相关性。所有性状密度组合的r_MP的非零估计暗示了基因组选择的效率。在训练和验证群体之间观察到低于预期的遗传相关性值。然而,在评估的所有三种规模的训练群体(20-40%、40-60%和60-80%)中,观察到训练和验证群体的遗传相关性与r_MP之间存在很强的相关性,这表明通过适当的选择可以在保持高r_MP的同时保持低训练群体的规模。建议进一步研究有效种群规模较大的训练种群和验证种群之间的关系,因为在保持高r_MP的同时减少训练种群的规模可以促进玉米育种计划中更有效的资源分配。
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Faktori koji utječu na efikasnost genomskih predviđanja u testrižancima biparentalne populacije
Genomic prediction accuracy (r_MP) is affected by many factors, such as the trait heritability, training population size and structure, and the number of markers. This study’s objective was to investigate the factors associated with r_MP for the ear height and the plant height in two planting densities in testcrosses of maize (Zea mays L.) IBM population. Genetic correlations between the training and validation populations were calculated. The high heritability estimates and correlations between the traits were observed. The non-zero estimates of r_MP for all trait-density combinations implied an efficiency of genomic selection. The lower than expected values of genetic correlations were observed between the training and validation populations. However, a strong correlation was observed between a genetic correlation of training and the validation population and r_MP in all three sizes of training populations assessed (20-40%, 40-60%, and 60-80%), suggesting that the size of the training population can be kept low by an appropriate selection while maintaining a high r_MP. Further studies of relationships between the training and validation populations with larger effective population sizes are suggested, as reducing the size of training population while maintaining a high r_MP can facilitate a more effective allocation of resources in a maize breeding program.
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来源期刊
Poljoprivreda
Poljoprivreda AGRICULTURAL ECONOMICS & POLICY-
CiteScore
1.00
自引率
14.30%
发文量
13
审稿时长
15 weeks
期刊介绍: POLJOPRIVREDA“ (AGRICULTURE), a scientific-professional journal has been issued since 1995 by the Faculty of Agriculture in Osijek and Agricultural Institute Osijek . The journal is a successor of the former one „Science and practice in agriculture and food technology“ printed from 1982 to 1994. The journal „Poljoprivreda“ is known for publishing scientific and professional articles from all fields of agricultural science and profession. The papers are reviewed. Articles are categorized by two independent referees and approved by Editorial board and Editor – in – chief. Summaries of master"s and doctor"s theses are also published as well as other contributions by the special decisions of the Editorial board.
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