通过提高元数据质量,为真菌生物地理学提供多元使用元条形码数据的机会

IF 5.7 2区 生物学 Q1 MYCOLOGY Fungal Biology Reviews Pub Date : 2023-01-01 DOI:10.1016/j.fbr.2023.100329
Mathew Andrew Harris , Bernard Slippers , Martin Kemler , Michelle Greve
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引用次数: 0

摘要

元条形码技术的广泛应用以及直接从环境样品中对微生物群落进行测序的能力,推动了真菌生态学领域的发展。公共大数据的增长为整理不同来源的数据提供了机会,可以在大空间尺度上探索真菌类群的生物地理和宏观生态模式。这需要与原始测序数据相关联的可靠和高质量的元数据。我们评估了提交的与陆生植物相关真菌遗传标记序列相关的元数据的准确性,这些数据提取自NCBI的BioProject门户网站。确定了正确捕获、丢失和错误提供的元数据的数量。提交者定义的元数据质量参差不齐,有些人遵守元数据标准,有些人没有捕获某些属性的元数据,或者在捕获元数据时跨样本复制元数据,或者只是部分满足元数据需求。这最终限制了查找和随后重用序列数据的能力。元条形码数据的快速积累和直接比较来自不同研究的样本的能力为深入了解真菌生物地理模式及其驱动因素提供了机会。将元数据属性的标准化词汇表提交给NCBI的Sequence Read Archive等公共存储库,再加上对数据提供者的充分激励,将促进可查找性、可访问性、互操作性和可重用性(FAIR)数据原则,并最终使元条形码序列数据能够很容易地用于真菌领域的大规模全球生物地理学研究。
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Opportunities for diversified usage of metabarcoding data for fungal biogeography through increased metadata quality
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来源期刊
CiteScore
10.60
自引率
0.00%
发文量
36
期刊介绍: Fungal Biology Reviews is an international reviews journal, owned by the British Mycological Society. Its objective is to provide a forum for high quality review articles within fungal biology. It covers all fields of fungal biology, whether fundamental or applied, including fungal diversity, ecology, evolution, physiology and ecophysiology, biochemistry, genetics and molecular biology, cell biology, interactions (symbiosis, pathogenesis etc), environmental aspects, biotechnology and taxonomy. It considers aspects of all organisms historically or recently recognized as fungi, including lichen-fungi, microsporidia, oomycetes, slime moulds, stramenopiles, and yeasts.
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