泛癌分析揭示SLC47A1免疫浸润与人类肿瘤临床预后的关系

Nan HUANG , Zheng LIU , Ronghui LI
{"title":"泛癌分析揭示SLC47A1免疫浸润与人类肿瘤临床预后的关系","authors":"Nan HUANG ,&nbsp;Zheng LIU ,&nbsp;Ronghui LI","doi":"10.1016/S2707-3688(23)00098-5","DOIUrl":null,"url":null,"abstract":"<div><h3>Objective</h3><p>Objective To analyze the differential expression and prognosis of Solute Carrier Family 47 Member 1 (<em>SLC47A1</em>) in human pan-cancer using bioinformatic methods to explore the prognostic value of <em>SLC47A1</em> for human pan-cancer and to determine its immune regulatory role.</p></div><div><h3>Methods</h3><p>The Cancer Genome Atlas (TCGA) pan-cancer database was used to analyze the diagnostic and prognostic value of <em>SLC47A1,</em> as well as its expression patterns. Pearson correlation analysis was used to evaluate the relationship between <em>SLC47A1</em> and stromal scores, immune scores, tumor mutation burden (TMB), and microsatellite instability (MSI). The correlation between <em>SLC47A1</em> and specific tumor immune subtypes was analyzed using the Tumor-Immune System Interactions Database (TISIDB). Analysis of differential methylation of <em>SLC47A1</em> and prognostic analyses were performed using the Disease Meth and TCGA Pan-Cancer databases.</p></div><div><h3>Results</h3><p><em>SLC47A1</em> was abnormally expressed in 17 tumors and shows low expression levels in 11 tumor tissues. Low expression of <em>SLC47A1</em> was associated with poor prognosis and diagnosis. Moreover, <em>SLC47A1</em> was also involved in tumor microenvironment regulation. <em>SLC47A1</em> methylation was disordered in 15 tumors, and disordered methylation was associated with survival.</p></div><div><h3>Conclusion</h3><p>Overall, these results indicate that <em>SLC47A1</em> may serve as an important prognostic biomarker and may correlate with tumor immunity in human pan-cancer.</p></div>","PeriodicalId":100787,"journal":{"name":"Journal of Holistic Integrative Pharmacy","volume":"4 1","pages":"Pages 103-118"},"PeriodicalIF":0.0000,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Pan-cancer analysis reveals the relationship between SLC47A1 immune infiltration and clinical prognosis of human tumors\",\"authors\":\"Nan HUANG ,&nbsp;Zheng LIU ,&nbsp;Ronghui LI\",\"doi\":\"10.1016/S2707-3688(23)00098-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Objective</h3><p>Objective To analyze the differential expression and prognosis of Solute Carrier Family 47 Member 1 (<em>SLC47A1</em>) in human pan-cancer using bioinformatic methods to explore the prognostic value of <em>SLC47A1</em> for human pan-cancer and to determine its immune regulatory role.</p></div><div><h3>Methods</h3><p>The Cancer Genome Atlas (TCGA) pan-cancer database was used to analyze the diagnostic and prognostic value of <em>SLC47A1,</em> as well as its expression patterns. Pearson correlation analysis was used to evaluate the relationship between <em>SLC47A1</em> and stromal scores, immune scores, tumor mutation burden (TMB), and microsatellite instability (MSI). The correlation between <em>SLC47A1</em> and specific tumor immune subtypes was analyzed using the Tumor-Immune System Interactions Database (TISIDB). Analysis of differential methylation of <em>SLC47A1</em> and prognostic analyses were performed using the Disease Meth and TCGA Pan-Cancer databases.</p></div><div><h3>Results</h3><p><em>SLC47A1</em> was abnormally expressed in 17 tumors and shows low expression levels in 11 tumor tissues. Low expression of <em>SLC47A1</em> was associated with poor prognosis and diagnosis. Moreover, <em>SLC47A1</em> was also involved in tumor microenvironment regulation. <em>SLC47A1</em> methylation was disordered in 15 tumors, and disordered methylation was associated with survival.</p></div><div><h3>Conclusion</h3><p>Overall, these results indicate that <em>SLC47A1</em> may serve as an important prognostic biomarker and may correlate with tumor immunity in human pan-cancer.</p></div>\",\"PeriodicalId\":100787,\"journal\":{\"name\":\"Journal of Holistic Integrative Pharmacy\",\"volume\":\"4 1\",\"pages\":\"Pages 103-118\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-03-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Holistic Integrative Pharmacy\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2707368823000985\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Holistic Integrative Pharmacy","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2707368823000985","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

目的应用生物信息学方法分析可溶性载体家族47成员1(SLC47A1)在人全癌组织中的差异表达及预后,探讨其对人全癌的预后价值及免疫调节作用。方法利用癌症基因组图谱(TCGA)全癌数据库分析SLC47A1的诊断和预后价值及其表达模式。Pearson相关分析用于评估SLC47A1与基质评分、免疫评分、肿瘤突变负荷(TMB)和微卫星不稳定性(MSI)之间的关系。使用肿瘤免疫系统相互作用数据库(TISDB)分析SLC47A1与特定肿瘤免疫亚型之间的相关性。使用Disease Meth和TCGA Pan-Cancer数据库进行SLC47A1的差异甲基化分析和预后分析。结果SLC47A1在17例肿瘤中异常表达,在11例肿瘤组织中低表达。SLC47A1的低表达与预后和诊断不良有关。此外,SLC47A1也参与了肿瘤微环境的调节。SLC47A1甲基化在15个肿瘤中发生紊乱,紊乱的甲基化与生存率有关。结论总的来说,这些结果表明SLC47A1可能是一种重要的预后生物标志物,并可能与人类肿瘤免疫相关。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Pan-cancer analysis reveals the relationship between SLC47A1 immune infiltration and clinical prognosis of human tumors

Objective

Objective To analyze the differential expression and prognosis of Solute Carrier Family 47 Member 1 (SLC47A1) in human pan-cancer using bioinformatic methods to explore the prognostic value of SLC47A1 for human pan-cancer and to determine its immune regulatory role.

Methods

The Cancer Genome Atlas (TCGA) pan-cancer database was used to analyze the diagnostic and prognostic value of SLC47A1, as well as its expression patterns. Pearson correlation analysis was used to evaluate the relationship between SLC47A1 and stromal scores, immune scores, tumor mutation burden (TMB), and microsatellite instability (MSI). The correlation between SLC47A1 and specific tumor immune subtypes was analyzed using the Tumor-Immune System Interactions Database (TISIDB). Analysis of differential methylation of SLC47A1 and prognostic analyses were performed using the Disease Meth and TCGA Pan-Cancer databases.

Results

SLC47A1 was abnormally expressed in 17 tumors and shows low expression levels in 11 tumor tissues. Low expression of SLC47A1 was associated with poor prognosis and diagnosis. Moreover, SLC47A1 was also involved in tumor microenvironment regulation. SLC47A1 methylation was disordered in 15 tumors, and disordered methylation was associated with survival.

Conclusion

Overall, these results indicate that SLC47A1 may serve as an important prognostic biomarker and may correlate with tumor immunity in human pan-cancer.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Secondary metabolites from the cold-seep-derived fungus Penicillium sp. SCSIO 41425 and their free radical scavenging activity The versatility of apigenin: Especially as a chemopreventive agent for cancer Research progress in application of alginate gel as tumor drug delivery carrier, for tumor localization and 3D tumor cell model Exercise therapy: Anti-tumor and improving chemotherapy efficacy The research advance on the theory of Chinese medicine-exterior-interior correlation between the Lung and Large Intestine in the treatment of chronic cough
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1