识别具有序列相似性的家族110成员C(FAM110C)作为胶质瘤的候选诊断和预后生物标志物。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-10-01 DOI:10.18502/ijph.v52i10.13850
Deshuai Ren, Xiaoyu Zhuang, Yanxin Lv, Yun Zhang, Jiazhi Xu, Fengquan Gao, Dagang Chen, Yu Wang
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引用次数: 0

摘要

背景:胶质瘤是最常见和最危险的原发性脑肿瘤。因此,有必要开发用于神经胶质瘤诊断和治疗的分子靶点。方法:2020年9月,我们从TCGA(癌症基因组图谱)数据库中检索了胶质母细胞瘤(GBM)患者的表达矩阵和相关临床数据。采用Kaplan-Meier对数秩检验评估具有序列相似性的110成员C(FAM110C)表达组的不同家族之间的预后差异。R平台用于评估FAM110C递送在使用时间依赖性受体操作特征(ROC)曲线预测PDAC预后方面的准确性。通过qRT-PCR和蛋白质印迹测定FAM110C的递送水平。基因集富集研究了GBM(GSEA)中不同FAM110C表达组之间的可能机制。通过迁移试验发现FAM110C对胶质瘤细胞运动的影响。CCK8试验验证了该药物的基因靶向作用。结果:从TCGA数据库中共获得173个GBM样本,其中148个包含IDH1突变信息,151个包含总生存率信息。根据qRT-PCR数据,野生型GBM中FAM110C的mRNA表达水平更高。使用GSEA软件研究FAM110C表达与Hallmark、GO和KEGG通路基因集之间的联系。我们使用迁移测试来评估FAM110C对神经胶质瘤运动的影响,以证实GSEA分析的结果。结论:FAM110C可能作为野生型GBM的诊断和预后生物标志物,其抑制作用可用于预防和治疗野生型GBM。
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Identification of Family with Sequence Similarity 110 Member C (FAM110C) as a Candidate Diagnostic and Prognostic Biomarker for Glioma.

Background: Gliomas are the most frequent and dangerous primary cerebral tumors. Therefore, there is a need to develop molecular targets for the diagnosis and treatment for glioma.

Methods: In September 2020, we retrieved the expression matrix of glioblastoma (GBM) sufferers and pertinent clinical data from the TCGA (The Cancer Genome Atlas) database. Prognostic differences between various families with sequence similarity 110 member C (FAM110C) expression groups were assessed by Kaplan-Meier with log-rank test. The R platform get used to assess the accuracy of FAM110C delivery in predicting the prognosis of PDAC using a time-dependent receptor operating characteristic (ROC) curve. The delivery level of FAM110C was determined by qRT-PCR and western blot. Gene set enrichment investigated possible mechanisms between different FAM110C expression groups in GBM (GSEA). The impact of FAM110C on glioma cell movement was discovered using migration test. The drug's gene-targeting impact was validated by the CCK8 test.

Results: A total of 173 GBM samples were obtained from the TCGA database, with 148 including information on IDH1 mutations and 151 containing information on overall survival. The mRNA expression level of FAM110C was greater in wild-type GBM, according to qRT-PCR data. The connection between FAM110C expression and Hallmark, GO, and KEGG pathway gene sets was investigated using GSEA software. We used migration test to assess the impact of FAM110C on glioma motility in order to confirm the findings of the GSEA analysis.

Conclusion: FAM110C might get used as a possible diagnostic and prognostic biomarker for wild-type GBM, and its inhibition could be used to prevention and treatment wild-type GBM.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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