基于生物信息学分析的转移性骨肉瘤潜在预后预测模型。

IF 0.5 4区 医学 Q4 ORTHOPEDICS Acta orthopaedica Belgica Pub Date : 2023-09-01 DOI:10.52628/89.2.10491
Yan Wang, Guangfu Ming, Bohua Gao
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引用次数: 0

摘要

骨肉瘤是一种发病率较高的恶性原发性骨肿瘤。本研究旨在通过筛选转移性OS的预后mRNA来构建预后预测模型。来自国家生物技术信息中心基因表达综合库的四个合格表达谱的数据是基于纳入标准获得的,并定义为训练集或验证集。首先确定了训练集中亚稳态和非转移性OS样本之间的差异表达类型(DEG),并通过单变量Cox回归分析筛选与预后相关的DEG。总共确定了107个与转移性OS预后相关的DEG。然后,分离出46个DEG作为优化的预后基因标记,并构建了转移性OS鉴别分类器,该分类器在区分转移性OS和非转移性OS样本方面具有较高的准确性。此外,进一步筛选了四种优化的预后基因标记(ALOX5AP、COL21A1、HLA-DQB1和LDHB),并构建了转移性OS的预后预测模型。该模型在训练集和验证集都具有相对令人满意的预测能力。基于四个预后mRNA特征构建的预后预测模型对转移性OS的预后具有很高的预测能力。
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A potential prognostic prediction model for metastatic osteosarcoma based on bioinformatics analysis.

Osteosarcoma (OS) is a malignant primary bone tumor with a high incidence. This study aims to construct a prognostic prediction model by screening the prognostic mRNA of metastatic OS. Data on four eligible expression profiles from the National Center for Biotechnology Information Gene Expression Omnibus repository were obtained based on inclusion criteria and defined as the training set or the validation set. The differentially expressed genres (DEGs) between meta- static and non-metastatic OS samples in the training set were first identified, and DEGs related to prognosis were screened by univariate Cox regression analysis. In total, 107 DEGs related to the prognosis of metastatic OS were identified. Then, 46 DEGs were isolated as the optimized prognostic gene signature, and a metastatic-OS discriminating classifier was constructed, which had a high accuracy in distinguishing metastatic from non-metastatic OS samples. Furthermore, four optimized prognostic gene signatures (ALOX5AP, COL21A1, HLA-DQB1, and LDHB) were further screened, and the prognostic prediction model for metastatic OS was constructed. This model possesses a relatively satisfying prediction ability both in the training set and validation set. The prognostic prediction model that was constructed based on the four prognostic mRNA signatures has a high predictive ability for the prognosis of metastatic OS.

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来源期刊
Acta orthopaedica Belgica
Acta orthopaedica Belgica 医学-整形外科
CiteScore
0.70
自引率
0.00%
发文量
58
审稿时长
4-8 weeks
期刊介绍: Information not localized
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