展望电子设计自动化在合成生物学中的作用[来自EIC]

K. Chakrabarty
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引用次数: 0

摘要

这个前瞻性的特别部分强调了电子设计自动化(EDA)社区可以探索的一些生物设计挑战,并说明了EDA和合成生物学之间的许多相似之处和一些关键差异。特邀编辑道格·登莫尔和索哈·哈桑为我们制作了这个特别栏目。他们必须接触来自传统设计和测试社区之外的研究人员。总编辑欢迎来自平行研究领域的专家的这些贡献,并希望D&T能够发展长期联盟,吸引来自联合学科的读者和贡献者。特别部分的文章包括客座编辑关于合成生物学和设计的教程,使用自底向上组装遗传电路的互补方法和基于遗传途径修改的更高级别方法。接下来的三篇文章涵盖了研究进展的范围,从使用分子反应的数字信号处理,合成生物学系统的模拟,以及生物系统动力学的数学建模。一篇关于EDA与合成生物学融合的展望文章提供了历史背景,并做出了一些大胆的预测。读者还会发现我们的“最后一个字节”专栏将事实与虚构相结合,以“创造性”的眼光看待合成生物学。本期D&T还包括三篇关于系统设计的非主题文章。其中包括用于执行Clifford代数操作的并行嵌入式硬件的设计空间探索,用于安全ic的硬件IP保护,以及用于验证片上通信结构的形式化建模。最后,该问题包括一篇文章,重点介绍了半导体行业中的组织动力学及其与团队生产力的关系。
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Looking ahead at the role of electronic design automation in synthetic biology [From the EIC]
This forward-looking special section highlights a number of bio-design challenges to that the electronic design automation (EDA) community can explore, and it illustrates the many similarities and some key differences between EDA and synthetic biology. Guest Editors Doug Denmore and Soha Hassoun have put together this special section. They had to reach out to researchers who are from outside the traditional design and test community. The editor-in-chief welcomes these contributions from experts in parallel research areas, and hopes that D&T can develop longer-term alliances and attract readers and contributors from allied disciplines. The articles in the special section include a tutorial by the guest editors on synthetic biology and design using complementary methods of bottom-up assembly of genetic circuits and a higher-level approach based on the modification of genetic pathways. The next three articles cover the landscape of research advances, ranging from digital signal processing using molecular reactions, simulation of synthetic biology systems, and mathematically modeling of the dynamics in biological systems. A perspectives article on the convergence of EDA with synthetic biology provides historical context andmakes some bold predictions. Readerswill also find our regular Last Byte column that blends fact with fiction and provides a "creative" look at synthetic biology. This issue of D&T also includes three non-theme articles on system design. These include design space exploration of parallel, embedded hardware for executing Clifford algebra operations, hardware IP protection for secure ICs, and formal modeling to enable the verification of the on-chip communication fabric. Finally, the issue includes an article that highlights organizational dynamics and its relationship to team productivity in the semiconductor industry.
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来源期刊
IEEE Design & Test of Computers
IEEE Design & Test of Computers 工程技术-工程:电子与电气
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