2021年4月至2022年2月土耳其SARS-CoV-2变体的传播动力学

M. Sayan, A. Arıkan, Murat Isbilen
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引用次数: 3

摘要

通过基因组测序诊断新的变异并监测其对诊断、治疗和疫苗的潜在影响,对于管理全球公共危机至关重要。在目前的研究中,对492株SARS-CoV-2分离株进行了刺基因组下一代测序,以评估2021年4月至2022年2月在土耳其发生的突变。使用斯坦福大学冠状病毒抗病毒和耐药性数据库(CoV-RDB)进行变异分析。我们发现,在此期间,土耳其环流中存在Alpha (B.1.1.7)、Beta (B.1.351)、Delta (B.1.617.2)、Eta (B.1.525)、interest variant (VOI)、lota (B.1.526)、Zeta (P.2)、Omicron (B.1.1.529)和Omicron BA.1 (B.1.1.529.1)谱系。最常见的谱系是B.1.1.7、B.1.617.2、B.1.1.529和B.1.1.529.1。土耳其的SARS-CoV-2变体传播似乎高度异质性;然而,与全球流行病学分析相当相似。在土耳其以相同的时间顺序存在全球流行的变异,可作为今后采取预防措施、治疗和疫苗选择的指南。
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Circulating Dynamics of SARS-CoV-2 Variants between April 2021 and February 2022 in Turkey
The diagnosis of new variants and monitoring their potential effects on diagnosis, therapeutics, and vaccines by genomic sequencing is essential to manage global public crises. In the current study, spike-genome next-generation sequencing was generated from 492 SARS-CoV-2 isolates to evaluate the mutations in Turkey from April 2021 to February 2022. The variant analysis was performed using (Coronavirus Antiviral and Resistance Database (CoV-RDB) by Stanford University). We revealed that the lineages Alpha (B.1.1.7), Beta (B.1.351), Delta (B.1.617.2), Eta (B.1.525), variant of interest (VOI), lota (B.1.526), Zeta (P.2), Omicron (B.1.1.529), and Omicron BA.1 (B.1.1.529.1) were in the circulation in Turkey during the given period. The most common lineages were B.1.1.7, B.1.617.2, B.1.1.529, and B.1.1.529.1 SARS-CoV-2 variant circulation in Turkey seems highly heterogenetic; however, quite similar to the global epidemiologic analysis. The existence of globally circulating variants in the same chronological order in Turkey can be a guide for precautions, treatment, and vaccine options to be taken in the future.
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