利用线粒体基因组序列对伊朗水蛙属(无尾目:蛙科)进行首次分类重估

IF 1.1 4区 生物学 Q4 GENETICS & HEREDITY Mitochondrial Dna Part a Pub Date : 2017-05-01 DOI:10.3109/19401736.2015.1127362
A. Pesarakloo, E. Rastegar-pouyani, N. Rastegar-Pouyani, H. Kami, M. Najibzadeh, A. Khosravani, H. Oraie
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引用次数: 16

摘要

在过去的40年里,欧亚大陆的水蛙种类及其地理分布范围发生了相当大的变化,但伊朗的种群在很大程度上仍然未知。伊朗所有的水蛙种群,尽管分布范围很广,但都属于一个物种:Rana ridibunda。为了了解伊朗水蛙的系统发育关系和分类地位,我们收集了伊朗许多种群的样本,并利用线粒体DNA序列变异进行了研究。从70个Pelophylax个体中获得了Cyt b的最终序列长度为616个核苷酸的数据集,其中有422个不变位点,174个可变位点,其中123个是简约信息。共检测到43个单倍型(Hd: 0.9752)。结果表明,在伊朗水蛙中可以识别出两个具有强支撑力的主要分支。其中一个分支包括西北和西南种群,与来自土耳其的P. bedriagae样本形成了一个单系群。第二个分支由伊朗北部和东北部的水蛙种群组成,而后者又被细分为两个分支。邻近地区的水蛙样本表明,我们研究的第二支系很可能是一个独特的物种分类实体,其两个亚支系表明该支系有两个可诊断的亚种。综上所述,我们认为伊朗的水蛙有两个不同的种,即P. bedriagae和Pelophylax sp.及其两个亚种。此外,另一种传统报道的伊朗水蛙p.r idbundus很可能应该从伊朗水蛙的清单中排除。
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The first taxonomic revaluation of the Iranian water frogs of the genus Pelophylax (Anura: Ranidae) using sequences of the mitochondrial genome
Abstract The Eurasian water frog species and their geographic ranges have undergone considerable changes in the last four decades, but the Iranian populations have largely remained unknown. All the Iranian populations of water frogs, despite their vast distribution range have attributed to a single species: Rana ridibunda. In order to understand the phylogenetic relationships and taxonomic status of water frogs of Iran, we collected samples from many populations across the country and used the mitochondrial DNA sequence variation. A data set with a final sequence length of 616 nucleotides was generated for Cyt b from 70 individuals of Pelophylax in which there are 422 invariable sites, 174 variable sites of which 123 were parsimony informative. In total, 43 haplotypes were found (Hd: 0.9752). The result demonstrated that, two major clades with strong support can be identified within the Iranian water frogs. One of these clades that include north western and southwestern populations forms a monophyletic group along with P. bedriagae samples from Turkey. The second clade consists of water frog populations of north and northeastern parts of Iran which in turn is subdivided into two subclades. Inclusion of water frog samples from adjacent areas showed that the second clade of our study is, most likely, a distinct taxonomic entity at species rank with its two subclades indicating two diagnosable subspecies for the clade. In conclusion, we suggest that two distinct species, P. bedriagae and Pelophylax sp., with its two subspecies, should be identified as water frogs of Iran. In Addition, another traditionally reported water frog of Iran, P.ridibundus, most likely should be excluded from the Iranian water frog’s checklist.
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来源期刊
Mitochondrial Dna Part a
Mitochondrial Dna Part a Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.00
自引率
0.00%
发文量
6
期刊介绍: Mitochondrial DNA Part A publishes original high-quality manuscripts on physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism, and/or interactions. Manuscripts on cytosolic and extracellular mtDNA, and on dysfunction caused by alterations in mtDNA integrity as well as methodological papers detailing novel approaches for mtDNA manipulation in vitro and in vivo are welcome. Descriptive papers on DNA sequences from mitochondrial genomes, and also analytical papers in the areas of population genetics, phylogenetics and human evolution that use mitochondrial DNA as a source of evidence for studies will be considered for publication. The Journal also considers manuscripts that examine population genetic and systematic theory that specifically address the use of mitochondrial DNA sequences, as well as papers that discuss the utility of mitochondrial DNA information in medical studies and in human evolutionary biology.
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