DNA条形码技术在地中海部分鱼类(蛤科)鉴定中的应用

S. Eissa, Y. G. Fiteha, H. Elhifnawy, Mahmoud Magdy, A. Mamoon, N. Hussien, M. Rashed
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引用次数: 2

摘要

背景:DNA条形码依赖于线粒体基因组中细胞色素C氧化酶亚基I (COI)基因的片段,在物种识别和生物多样性研究中具有广泛的用途。本研究的目的是建立一个完整的地中海棘鱼科鱼类的条形码参考数据库。材料与方法:对八种刺形目蛛科的线粒体COI条形码序列进行了验证,线粒体COI序列平均长度为650个碱基对。结果:系统发育树分析结果显示,夏螨科属属单一。所研究的物种显示出同源序列的分支,并显示本研究与GenBank (NCBI)数据库之间的匹配。所有组都聚集在高bootstrap值,在每个分支旁边显示,树是基于typus的外组扎根的。结论:COI测序可用于识别不同的鱼类,并可用于通过DNA条形码获得较高的物种重组能力。我们强调了DNA条形码及其工具识别地中海不同物种的能力。结果通过DNA条形码技术给出了所研究的每个物种的物种ID。
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DNA Barcoding for Identification of Some Fish Species (Sparidae) in Mediterranean Sea Area
Background: DNA barcoding depend on a piece of the cytochrome C oxidase subunit I (COI) gene in the mitochondrial genome is broadly useful in species ID and biodiversity studies. The aim of this study is to create a complete barcoding reference database of some fishes in the Mediterranean Sea fall under the family Sparidae. . Materials and methods: Mitochondrial COI barcode sequences were demonstrated from 8 species of family Sparidae in the order Perciformes, the mean length of Mitochondrial COI sequences was 650 base pairs. Results: The results of the phylogenetic tree presented that monophyly of Sparidae species. The studied species displayed clades of conspecific sequences and showed a match between the present study and the GenBank (NCBI) database. All groups clustered with high bootstrap value, that showed next to each branch and the tree was rooted based on the out group of Rhincodon typus. Conclusion: We achieve that COI sequencing can be used to recognize different fish species, and also it is used to obtain high competence of species reorganization by DNA barcoding. We underline the power of DNA barcode and its tools to identify different species from Mediterranean Sea. Results give Species ID for each species under study by using DNA barcoding.
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