{"title":"氨基酸分类和可视化的形式化概念分析","authors":"Adrian-Sorin Telcian, D. Cristea, Ioan Sima","doi":"10.2478/ausi-2020-0002","DOIUrl":null,"url":null,"abstract":"Abstract Formal concept analysis (FCA) is a method based on lattice theory, widely used for data visualization, data analysis and knowledge discovery. Amino acids (AAs) are chemical molecules that constitute the proteins. In this paper is presented a new and easy way of visualizing of the structure and properties of AAs. In addition, we performed a new Hydrophobic-Polar classification of AAs using FCA. For this, the 20 proteinogenic AAs were clustered, classified by hydrophobicity and visualized in Hasse-diagrams. Exploring and processing the dataset was done with Elba and ToscanaJ, some FCA tools and Conceptual Information System (CIS).","PeriodicalId":41480,"journal":{"name":"Acta Universitatis Sapientiae Informatica","volume":"42 1","pages":"22 - 38"},"PeriodicalIF":0.3000,"publicationDate":"2020-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":"{\"title\":\"Formal concept analysis for amino acids classification and visualization\",\"authors\":\"Adrian-Sorin Telcian, D. Cristea, Ioan Sima\",\"doi\":\"10.2478/ausi-2020-0002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract Formal concept analysis (FCA) is a method based on lattice theory, widely used for data visualization, data analysis and knowledge discovery. Amino acids (AAs) are chemical molecules that constitute the proteins. In this paper is presented a new and easy way of visualizing of the structure and properties of AAs. In addition, we performed a new Hydrophobic-Polar classification of AAs using FCA. For this, the 20 proteinogenic AAs were clustered, classified by hydrophobicity and visualized in Hasse-diagrams. Exploring and processing the dataset was done with Elba and ToscanaJ, some FCA tools and Conceptual Information System (CIS).\",\"PeriodicalId\":41480,\"journal\":{\"name\":\"Acta Universitatis Sapientiae Informatica\",\"volume\":\"42 1\",\"pages\":\"22 - 38\"},\"PeriodicalIF\":0.3000,\"publicationDate\":\"2020-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Universitatis Sapientiae Informatica\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2478/ausi-2020-0002\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"COMPUTER SCIENCE, THEORY & METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Universitatis Sapientiae Informatica","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2478/ausi-2020-0002","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"COMPUTER SCIENCE, THEORY & METHODS","Score":null,"Total":0}
Formal concept analysis for amino acids classification and visualization
Abstract Formal concept analysis (FCA) is a method based on lattice theory, widely used for data visualization, data analysis and knowledge discovery. Amino acids (AAs) are chemical molecules that constitute the proteins. In this paper is presented a new and easy way of visualizing of the structure and properties of AAs. In addition, we performed a new Hydrophobic-Polar classification of AAs using FCA. For this, the 20 proteinogenic AAs were clustered, classified by hydrophobicity and visualized in Hasse-diagrams. Exploring and processing the dataset was done with Elba and ToscanaJ, some FCA tools and Conceptual Information System (CIS).
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