Increasing fish diversity of Chicago's waterways

Descriptions of shifts in biodiversity across time are desired for urban freshwater systems to better study ecosystem change and causal mechanisms. I document changes in fish diversity within the Chicago Area Waterways across 35 years using a battery of diversity metrics calculated on both abundance and biomass data. Has diversity of Chicago's waterways changed over 35 years and if so, do different diversity metrics exhibit different trends or breakpoints in trends? Diversity of the fish assemblage increased across the three decades of study. Breakpoint analysis suggested that trends across the timeseries were nonlinear. Changes in dominant species influenced behavior of less traditional metrics, whereas Margalef's Richness, Shannon-Weiner, and Gini-Simpson appeared more robust. Increases in richness and taxonomic diversity combined with decreases in species dominance suggest an ecosystem of increasing quality. The fish community of the Chicago Area Waterway System is more diverse both in abundance as well as biomass (i.e., energy flows) in the late 2010's than it was in the late 1980's. Although external factors related to wastewater treatment increased water quality and likely led to these assemblage-level changes breakpoint analysis did not allow verification of causal mechanisms.