西藏无壳大麦叶绿体全基因组

IF 1.1 4区生物学 Q4 GENETICS & HEREDITY Mitochondrial Dna Part a Pub Date : 2017-05-01 DOI:10.3109/19401736.2015.1122765

Quan Zeng, J. H. Yuan, L. Wang, Jun Qi Xu, T. Nyima

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引用次数: 7

摘要

摘要利用IIlumina Hiseq 2000测序技术(IIlumina Inc.， San Diego, CA)报道了西藏裸鱼叶绿体全基因组。叶绿体基因组全长136 462 bp，包含两个10 528 bp的反向重复序列(IRs)，由大单拷贝(LSC 101 375 bp)和小单拷贝(SSC 14 030 bp)分开。无壳裸叶绿体基因组编码76个蛋白质编码基因、4个rRNA基因和29个tRNA基因。以水稻(Oryza sativa japonica)为外类群，选择了禾科9个完整叶绿体基因组的最大似然(ML)系统发育树，支持了无壳小麦与普通小麦(Hordeum vulgare)亚种的亲缘关系。vulgare。

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The complete chloroplast genome of Tibetan hulless barley

Abstract We report complete chloroplast genome of the Tibetan hulless barely using IIlumina Hiseq 2000 sequencing technology (IIlumina Inc., San Diego, CA). The chloroplast genome size is 136 462 bp in length that includes two inverted repeats (IRs) of 10 528 bp, which are separated by the large single copy (LSC 101 375 bp) and small single copy (SSC 14 030 bp). Hulless barely chloroplast genome encodes 76 protein-coding genes, four rRNA genes, and 29 tRNA genes. The maximum-likelihood (ML) phylogenetic tree of the nine complete chloroplast genomes was selected from Poaceae family using Oryza sativa japonica as the out-group, supporting that hulless barely is closely related to the Hordeum vulgare subsp. vulgare.

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来源期刊

Mitochondrial Dna Part a Biochemistry, Genetics and Molecular Biology-Genetics

CiteScore

3.00

自引率

0.00%

发文量

期刊介绍： Mitochondrial DNA Part A publishes original high-quality manuscripts on physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism, and/or interactions. Manuscripts on cytosolic and extracellular mtDNA, and on dysfunction caused by alterations in mtDNA integrity as well as methodological papers detailing novel approaches for mtDNA manipulation in vitro and in vivo are welcome. Descriptive papers on DNA sequences from mitochondrial genomes, and also analytical papers in the areas of population genetics, phylogenetics and human evolution that use mitochondrial DNA as a source of evidence for studies will be considered for publication. The Journal also considers manuscripts that examine population genetic and systematic theory that specifically address the use of mitochondrial DNA sequences, as well as papers that discuss the utility of mitochondrial DNA information in medical studies and in human evolutionary biology.