转录组分析揭示了弓形虫感染诱导细胞凋亡的多种途径

IF 4.7 3区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Zhejiang University SCIENCE B Pub Date : 2022-04-01 DOI:10.1631/jzus.B2100877
Kaige Du, F. Lu, Chengzuo Xie, Haojie Ding, Yu Shen, Ya-fan Gao, Shaohong Lu, Xunhui Zhuo
{"title":"转录组分析揭示了弓形虫感染诱导细胞凋亡的多种途径","authors":"Kaige Du, F. Lu, Chengzuo Xie, Haojie Ding, Yu Shen, Ya-fan Gao, Shaohong Lu, Xunhui Zhuo","doi":"10.1631/jzus.B2100877","DOIUrl":null,"url":null,"abstract":"Toxoplasma gondii is a worldwide parasite that can infect almost all kinds of mammals and cause fatal toxoplasmosis in immunocompromised patients. Apoptosis is one of the principal strategies of host cells to clear pathogens and maintain organismal homeostasis, but the mechanism of cell apoptosis induced by T. gondii remains obscure. To explore the apoptosis influenced by T. gondii, Vero cells infected or uninfected with the parasite were subjected to apoptosis detection and subsequent dual RNA sequencing (RNA-seq). Using high-throughput Illumina sequencing and bioinformatics analysis, we found that pro-apoptosis genes such as DNA damage-inducible transcript 3 (DDIT3), growth arrest and DNA damage-inducible α (GADD45A), caspase-3 (CASP3), and high-temperature requirement protease A2 (HtrA2) were upregulated, and anti-apoptosis genes such as poly(adenosine diphosphate (ADP)-ribose) polymerase family member 3 (PARP3), B-cell lymphoma 2 (Bcl-2), and baculoviral inhibitor of apoptosis protein (IAP) repeat containing 5 (BIRC5) were downregulated. Besides, tumor necrosis factor (TNF) receptor-associated factor 1 (TRAF1), TRAF2, TNF receptor superfamily member 10b (TNFRSF10b), disabled homolog 2 (DAB2)-interacting protein (DAB2IP), and inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) were enriched in the upstream of TNF, TNF-related apoptosis-inducing ligand (TRAIL), and endoplasmic reticulum (ER) stress pathways, and TRAIL-receptor 2 (TRAIL-R2) was regarded as an important membrane receptor influenced by T. gondii that had not been previously considered. In conclusion, the T. gondii RH strain could promote and mediate apoptosis through multiple pathways mentioned above in Vero cells. Our findings improve the understanding of the T. gondii infection process through providing new insights into the related cellular apoptosis mechanisms.","PeriodicalId":17797,"journal":{"name":"Journal of Zhejiang University SCIENCE B","volume":"11 1","pages":"315 - 327"},"PeriodicalIF":4.7000,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"5","resultStr":"{\"title\":\"Toxoplasma gondii infection induces cell apoptosis via multiple pathways revealed by transcriptome analysis\",\"authors\":\"Kaige Du, F. Lu, Chengzuo Xie, Haojie Ding, Yu Shen, Ya-fan Gao, Shaohong Lu, Xunhui Zhuo\",\"doi\":\"10.1631/jzus.B2100877\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Toxoplasma gondii is a worldwide parasite that can infect almost all kinds of mammals and cause fatal toxoplasmosis in immunocompromised patients. Apoptosis is one of the principal strategies of host cells to clear pathogens and maintain organismal homeostasis, but the mechanism of cell apoptosis induced by T. gondii remains obscure. To explore the apoptosis influenced by T. gondii, Vero cells infected or uninfected with the parasite were subjected to apoptosis detection and subsequent dual RNA sequencing (RNA-seq). Using high-throughput Illumina sequencing and bioinformatics analysis, we found that pro-apoptosis genes such as DNA damage-inducible transcript 3 (DDIT3), growth arrest and DNA damage-inducible α (GADD45A), caspase-3 (CASP3), and high-temperature requirement protease A2 (HtrA2) were upregulated, and anti-apoptosis genes such as poly(adenosine diphosphate (ADP)-ribose) polymerase family member 3 (PARP3), B-cell lymphoma 2 (Bcl-2), and baculoviral inhibitor of apoptosis protein (IAP) repeat containing 5 (BIRC5) were downregulated. Besides, tumor necrosis factor (TNF) receptor-associated factor 1 (TRAF1), TRAF2, TNF receptor superfamily member 10b (TNFRSF10b), disabled homolog 2 (DAB2)-interacting protein (DAB2IP), and inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) were enriched in the upstream of TNF, TNF-related apoptosis-inducing ligand (TRAIL), and endoplasmic reticulum (ER) stress pathways, and TRAIL-receptor 2 (TRAIL-R2) was regarded as an important membrane receptor influenced by T. gondii that had not been previously considered. In conclusion, the T. gondii RH strain could promote and mediate apoptosis through multiple pathways mentioned above in Vero cells. Our findings improve the understanding of the T. gondii infection process through providing new insights into the related cellular apoptosis mechanisms.\",\"PeriodicalId\":17797,\"journal\":{\"name\":\"Journal of Zhejiang University SCIENCE B\",\"volume\":\"11 1\",\"pages\":\"315 - 327\"},\"PeriodicalIF\":4.7000,\"publicationDate\":\"2022-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Zhejiang University SCIENCE B\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1631/jzus.B2100877\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Zhejiang University SCIENCE B","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1631/jzus.B2100877","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 5

摘要

刚地弓形虫是一种世界性的寄生虫,它可以感染几乎所有种类的哺乳动物,并在免疫功能低下的患者中引起致命的弓形虫病。细胞凋亡是宿主细胞清除病原体和维持机体稳态的主要策略之一,但弓形虫诱导细胞凋亡的机制尚不清楚。为了探讨弓形虫对细胞凋亡的影响,我们对感染或未感染弓形虫的Vero细胞进行了细胞凋亡检测并进行了双RNA测序(RNA-seq)。通过高通量Illumina测序和生物信息学分析,我们发现促凋亡基因如DNA损伤诱导转录物3 (DDIT3)、生长阻滞和DNA损伤诱导α (GADD45A)、CASP3 (CASP3)和高温要求蛋白酶A2 (HtrA2)上调,抗凋亡基因如聚二磷酸腺苷(ADP)核糖聚合酶家族成员3 (PARP3)、b细胞淋巴瘤2 (Bcl-2)、杆状病毒凋亡抑制蛋白(IAP)重复序列5 (BIRC5)表达下调。此外,肿瘤坏死因子(TNF)受体相关因子1 (TRAF1)、TRAF2、TNF受体超家族成员10b (TNFRSF10b)、失能同源物2 (DAB2)相互作用蛋白(DAB2IP)和肌醇1,4,5-三磷酸受体3 (ITPR3)富集于TNF、TNF相关凋亡诱导配体(TRAIL)和内质网(ER)应激途径的上游。而trail -受体2 (TRAIL-R2)被认为是弓形虫影响的一个重要的膜受体,以前没有被考虑过。综上所述,弓形虫RH菌株可通过上述多种途径促进和介导Vero细胞凋亡。我们的发现通过提供有关细胞凋亡机制的新见解,提高了对弓形虫感染过程的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Toxoplasma gondii infection induces cell apoptosis via multiple pathways revealed by transcriptome analysis
Toxoplasma gondii is a worldwide parasite that can infect almost all kinds of mammals and cause fatal toxoplasmosis in immunocompromised patients. Apoptosis is one of the principal strategies of host cells to clear pathogens and maintain organismal homeostasis, but the mechanism of cell apoptosis induced by T. gondii remains obscure. To explore the apoptosis influenced by T. gondii, Vero cells infected or uninfected with the parasite were subjected to apoptosis detection and subsequent dual RNA sequencing (RNA-seq). Using high-throughput Illumina sequencing and bioinformatics analysis, we found that pro-apoptosis genes such as DNA damage-inducible transcript 3 (DDIT3), growth arrest and DNA damage-inducible α (GADD45A), caspase-3 (CASP3), and high-temperature requirement protease A2 (HtrA2) were upregulated, and anti-apoptosis genes such as poly(adenosine diphosphate (ADP)-ribose) polymerase family member 3 (PARP3), B-cell lymphoma 2 (Bcl-2), and baculoviral inhibitor of apoptosis protein (IAP) repeat containing 5 (BIRC5) were downregulated. Besides, tumor necrosis factor (TNF) receptor-associated factor 1 (TRAF1), TRAF2, TNF receptor superfamily member 10b (TNFRSF10b), disabled homolog 2 (DAB2)-interacting protein (DAB2IP), and inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) were enriched in the upstream of TNF, TNF-related apoptosis-inducing ligand (TRAIL), and endoplasmic reticulum (ER) stress pathways, and TRAIL-receptor 2 (TRAIL-R2) was regarded as an important membrane receptor influenced by T. gondii that had not been previously considered. In conclusion, the T. gondii RH strain could promote and mediate apoptosis through multiple pathways mentioned above in Vero cells. Our findings improve the understanding of the T. gondii infection process through providing new insights into the related cellular apoptosis mechanisms.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Zhejiang University SCIENCE B
Journal of Zhejiang University SCIENCE B 生物-生化与分子生物学
CiteScore
8.70
自引率
13.70%
发文量
2125
审稿时长
3.0 months
期刊介绍: Journal of Zheijang University SCIENCE B - Biomedicine & Biotechnology is an international journal that aims to present the latest development and achievements in scientific research in China and abroad to the world’s scientific community. JZUS-B covers research in Biomedicine and Biotechnology and Biochemistry and topics related to life science subjects, such as Plant and Animal Sciences, Environment and Resource etc.
期刊最新文献
ATP-binding cassette (ABC) transporters: structures and roles in bacterial pathogenesis. Chronic exposure to hexavalent chromium induces esophageal tumorigenesis via activating the Notch signaling pathway. Artificial intelligence for brain disease diagnosis using electroencephalogram signals. Odor representation and coding by the mitral/tufted cells in the olfactory bulb. Phenolic-enabled nanotechnology: a new strategy for central nervous system disease therapy.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1