无状态5 '→3 '沃森-克里克有限自动机接受的语言类

IF 0.3 Q4 MATHEMATICS Annales Mathematicae et Informaticae Pub Date : 2023-01-01 DOI:10.33039/ami.2023.08.004
B. Nagy
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引用次数: 0

摘要

. 沃森-克里克自动机属于自然计算范式,因为这些有限自动机正在处理代表DNA分子的字符串。沃森-克里克自动机有两个读取头,在5 '→3 '模型中,这两个读取头从输入的两个极端开始。这是由于DNA链有5 '和3 '端,这是基于糖基的碳原子在共价键中用来延续链的事实。然而,在双链DNA中,链的方向是相反的,因此,如果酶要读取链,它可能会读取其5 '到3 '方向的每条链,这意味着从分子的两个极端开始物理上相反的方向。另一方面,酶可能没有内部状态,因此从这个角度来看,那些无状态(即只有一个状态)的沃森-克里克自动机更现实。本文研究了无状态5′→3′沃森-克里克自动机,并证明了其变体所接受的语言类的一些性质。我们展示了层次结果,以及这些语言的“泵送”,即迭代结果,可用于证明某些语言可能不在无状态5 '→3 '沃森-克里克自动机类所接受的类中。
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On language classes accepted by stateless 5′ → 3′ Watson-Crick finite automata
. Watson-Crick automata are belonging to the natural computing paradigm as these finite automata are working on strings representing DNA molecules. Watson-Crick automata have two reading heads, and in the 5 ′ → 3 ′ models these two heads start from the two extremes of the input. This is well motivated by the fact that DNA strands have 5 ′ and 3 ′ ends based on the fact which carbon atoms of the sugar group is used in the covalent bonds to continue the strand. However, in the two stranded DNA, the directions of the strands are opposite, so that, if an enzyme would read the strand it may read each strand in its 5 ′ to 3 ′ direction, which means physically opposite directions starting from the two extremes of the molecule. On the other hand, enzymes may not have inner states, thus those Watson-Crick automata which are stateless (i.e. have exactly one state) are more realistic from this point of view. In this paper these stateless 5 ′ → 3 ′ Watson-Crick automata are studied and some properties of the language classes accepted by their variants are proven. We show hierarchy results, and also a “pumping”, i.e., iteration result for these languages that can be used to prove that some languages may not be in the class accepted by the class of stateless 5 ′ → 3 ′ Watson-Crick automata.
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