Dihuai Zheng , Jiwei Xu , Yaqian Lu , Hongyu Chen , Qinjie Chu , Longjiang Fan
{"title":"植物单细胞转录组学研究进展","authors":"Dihuai Zheng , Jiwei Xu , Yaqian Lu , Hongyu Chen , Qinjie Chu , Longjiang Fan","doi":"10.1016/j.cropd.2023.100041","DOIUrl":null,"url":null,"abstract":"<div><p>High-throughput sequencing technologies at single-cell resolution have great potential to reveal a new landscape of plant cells. Single-cell/nucleus RNA (scRNA/snRNA), single-cell/nucleus assay for transposase accessible chromatin (scATAC/snATAC) and spatial transcriptome sequencing have been applied in multiple plant tissues. Consequently, a significant increase in publications on plant single-cell transcriptomics was seen in the recent two years. In this review, we will summarize the advantages and weaknesses of these single-cell sequencing approaches, offer a glimpse of their developments in cell biology, bioinformatic tools and databases in the latest two years.</p></div>","PeriodicalId":100341,"journal":{"name":"Crop Design","volume":"2 2","pages":"Article 100041"},"PeriodicalIF":0.0000,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2772899423000198/pdfft?md5=571167657c9e3bfdceb6a0720390134d&pid=1-s2.0-S2772899423000198-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Recent progresses in plant single-cell transcriptomics\",\"authors\":\"Dihuai Zheng , Jiwei Xu , Yaqian Lu , Hongyu Chen , Qinjie Chu , Longjiang Fan\",\"doi\":\"10.1016/j.cropd.2023.100041\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>High-throughput sequencing technologies at single-cell resolution have great potential to reveal a new landscape of plant cells. Single-cell/nucleus RNA (scRNA/snRNA), single-cell/nucleus assay for transposase accessible chromatin (scATAC/snATAC) and spatial transcriptome sequencing have been applied in multiple plant tissues. Consequently, a significant increase in publications on plant single-cell transcriptomics was seen in the recent two years. In this review, we will summarize the advantages and weaknesses of these single-cell sequencing approaches, offer a glimpse of their developments in cell biology, bioinformatic tools and databases in the latest two years.</p></div>\",\"PeriodicalId\":100341,\"journal\":{\"name\":\"Crop Design\",\"volume\":\"2 2\",\"pages\":\"Article 100041\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2772899423000198/pdfft?md5=571167657c9e3bfdceb6a0720390134d&pid=1-s2.0-S2772899423000198-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Crop Design\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2772899423000198\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Crop Design","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2772899423000198","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Recent progresses in plant single-cell transcriptomics
High-throughput sequencing technologies at single-cell resolution have great potential to reveal a new landscape of plant cells. Single-cell/nucleus RNA (scRNA/snRNA), single-cell/nucleus assay for transposase accessible chromatin (scATAC/snATAC) and spatial transcriptome sequencing have been applied in multiple plant tissues. Consequently, a significant increase in publications on plant single-cell transcriptomics was seen in the recent two years. In this review, we will summarize the advantages and weaknesses of these single-cell sequencing approaches, offer a glimpse of their developments in cell biology, bioinformatic tools and databases in the latest two years.
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