基于类型材料测序的欧洲海岸珊瑚物种多样性评估——以Lithophyllum nitorum (Corallinales, Rhodophyta)为例

IF 1.4 4区 生物学 Q3 MARINE & FRESHWATER BIOLOGY Cryptogamie Algologie Pub Date : 2018-02-23 DOI:10.7872/crya/v39.iss1.2018.123
V. Peña, Jazmín J. Hernández-Kantún, W. Adey, L. Gall
{"title":"基于类型材料测序的欧洲海岸珊瑚物种多样性评估——以Lithophyllum nitorum (Corallinales, Rhodophyta)为例","authors":"V. Peña, Jazmín J. Hernández-Kantún, W. Adey, L. Gall","doi":"10.7872/crya/v39.iss1.2018.123","DOIUrl":null,"url":null,"abstract":"Abstract A constant effort in sequencing an extensive number of specimens originating from comprehensive sampling had return an unprecedented amount of information fostering our understanding of diversity, evolution and distribution of coralline algae; however, many sequences lack reliable assignation of a taxonomic name, specially at the species level. Recently, the sequencing of type material allowed to bridge this gap by providing a direct link between the DNA sequence and the type bearing name. For instance, in the genus Lithophyllum, the identity of three species, generally abundant along the European Atlantic and the Mediterranean, was demonstrated by including sequences of the type material. Nevertheless, for less conspicious species, such as Lithophyllum nitorum, data are still needed to assess distribution, anatomy, phylogenetic affinities and taxonomic status. Using DNA sequences recovered from the type material of L. nitorum, further recent collections were resolved as conspecific and used to improve the description and refine the distribution of this species. Lithophyllum nitorum consisted of subtidal, thin crusts overgrowing fragments of dead maerl, pebbles and drifted fragments of fishing lines. The presence of uniporate conceptacles markedly protruding can be considered an external morphological feature useful to identify L. nitorum from other subtidal Lithophyllum species with similar habitat. Lithophyllum nitorum is reported for the Mediterranean Sea and confirmed in the North East Atlantic, a similar distribution as for L. incrustans and L. hibernicum.","PeriodicalId":51000,"journal":{"name":"Cryptogamie Algologie","volume":"76 1","pages":"123 - 137"},"PeriodicalIF":1.4000,"publicationDate":"2018-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"21","resultStr":"{\"title\":\"Assessment of Coralline Species Diversity in the European Coasts Supported by Sequencing of Type Material: The Case Study of Lithophyllum nitorum (Corallinales, Rhodophyta)\",\"authors\":\"V. Peña, Jazmín J. Hernández-Kantún, W. Adey, L. Gall\",\"doi\":\"10.7872/crya/v39.iss1.2018.123\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract A constant effort in sequencing an extensive number of specimens originating from comprehensive sampling had return an unprecedented amount of information fostering our understanding of diversity, evolution and distribution of coralline algae; however, many sequences lack reliable assignation of a taxonomic name, specially at the species level. Recently, the sequencing of type material allowed to bridge this gap by providing a direct link between the DNA sequence and the type bearing name. For instance, in the genus Lithophyllum, the identity of three species, generally abundant along the European Atlantic and the Mediterranean, was demonstrated by including sequences of the type material. Nevertheless, for less conspicious species, such as Lithophyllum nitorum, data are still needed to assess distribution, anatomy, phylogenetic affinities and taxonomic status. Using DNA sequences recovered from the type material of L. nitorum, further recent collections were resolved as conspecific and used to improve the description and refine the distribution of this species. Lithophyllum nitorum consisted of subtidal, thin crusts overgrowing fragments of dead maerl, pebbles and drifted fragments of fishing lines. The presence of uniporate conceptacles markedly protruding can be considered an external morphological feature useful to identify L. nitorum from other subtidal Lithophyllum species with similar habitat. Lithophyllum nitorum is reported for the Mediterranean Sea and confirmed in the North East Atlantic, a similar distribution as for L. incrustans and L. hibernicum.\",\"PeriodicalId\":51000,\"journal\":{\"name\":\"Cryptogamie Algologie\",\"volume\":\"76 1\",\"pages\":\"123 - 137\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2018-02-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"21\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Cryptogamie Algologie\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.7872/crya/v39.iss1.2018.123\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MARINE & FRESHWATER BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Cryptogamie Algologie","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.7872/crya/v39.iss1.2018.123","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MARINE & FRESHWATER BIOLOGY","Score":null,"Total":0}
引用次数: 21

摘要

摘要:通过对大量标本进行测序,获得了前所未有的信息,促进了我们对珊瑚藻多样性、进化和分布的认识;然而,许多序列缺乏可靠的分类名称分配,特别是在种水平上。最近,通过提供DNA序列和类型名称之间的直接联系,类型材料的测序允许弥合这一差距。例如,在Lithophyllum属中,通过包含模式材料的序列,证明了三个物种的身份,这些物种通常在欧洲大西洋和地中海沿岸丰富。然而,对于不太显眼的物种,如nitorum Lithophyllum,仍然需要数据来评估其分布、解剖、系统发育亲缘性和分类地位。利用从L. nitorum的类型材料中恢复的DNA序列,进一步将最近收集的标本解析为同种,并用于改进该物种的描述和完善其分布。nitorum石藻由潮下薄薄的外壳组成,上面长着死珊瑚碎片、鹅卵石和漂浮的渔线碎片。明显突出的单孔概念的存在可以被认为是一种有用的外部形态学特征,可以从其他具有相似栖息地的潮下岩性植物物种中识别出L. nitorum。据报道,地中海有nitorum Lithophyllum,东北大西洋也有,其分布与L. incrustans和L. hibernicum相似。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Assessment of Coralline Species Diversity in the European Coasts Supported by Sequencing of Type Material: The Case Study of Lithophyllum nitorum (Corallinales, Rhodophyta)
Abstract A constant effort in sequencing an extensive number of specimens originating from comprehensive sampling had return an unprecedented amount of information fostering our understanding of diversity, evolution and distribution of coralline algae; however, many sequences lack reliable assignation of a taxonomic name, specially at the species level. Recently, the sequencing of type material allowed to bridge this gap by providing a direct link between the DNA sequence and the type bearing name. For instance, in the genus Lithophyllum, the identity of three species, generally abundant along the European Atlantic and the Mediterranean, was demonstrated by including sequences of the type material. Nevertheless, for less conspicious species, such as Lithophyllum nitorum, data are still needed to assess distribution, anatomy, phylogenetic affinities and taxonomic status. Using DNA sequences recovered from the type material of L. nitorum, further recent collections were resolved as conspecific and used to improve the description and refine the distribution of this species. Lithophyllum nitorum consisted of subtidal, thin crusts overgrowing fragments of dead maerl, pebbles and drifted fragments of fishing lines. The presence of uniporate conceptacles markedly protruding can be considered an external morphological feature useful to identify L. nitorum from other subtidal Lithophyllum species with similar habitat. Lithophyllum nitorum is reported for the Mediterranean Sea and confirmed in the North East Atlantic, a similar distribution as for L. incrustans and L. hibernicum.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Cryptogamie Algologie
Cryptogamie Algologie 生物-海洋与淡水生物学
CiteScore
2.60
自引率
7.70%
发文量
11
审稿时长
>12 weeks
期刊介绍: Cryptogamie is a fast-track and peer-reviewed journal of international scope publishing in English only. It accepts original papers and review articles on the taxonomy, biology and ecology of all cryptogams. An issue of Cryptogamie may be devoted to a single topic, under the responsibility of guest editor(s). All articles published in Cryptogamie are compliant with the different nomenclatural codes. A copyright assignment will be signed by the authors before publication. Cryptogamie, Algologie accepts articles on systematics as well as ecology and evolution of any kind of algae (including Cyanobacteria).
期刊最新文献
Molecular-Assisted Taxonomic Study on the Sargassum C.Agardh (Fucales, Phaeophyceae) in Northwestern Luzon, Philippines Two New Species of Achnanthidium Kützing (Achnanthidiaceae) from the Quaternary Sediments of the Colônia Basin, Southeast Brazil A Taxonomic Assessment of Pyropia hiemalis (Kylin) Varela-Álvarez, Guiry & Serrão, comb. nov. (Bangiaceae, Bangiophyceae) Phylogeography of Amansia glomerata C.Agardh (Ceramiales, Rhodomelaceae) in Hawai‘i: A Single Species with High Divergence Structural and Functional Genes, and Highly Repetitive Sequences Commonly Used in the Phylogeny and Species Concept of the Phylum Cyanobacteria
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1