下一代测序方法破译土壤中隐藏的微生物宝藏

Ruchi Srivastava
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摘要

土壤是地球上最重要、最复杂的生物栖息地之一。正如我们所知,微生物在每个生态系统以及生物和生态过程中都是重要的关键角色。因此,有必要了解这种微生物宝藏,以了解它们在这些过程中的作用。最初依赖于培养的方法有很大帮助,但不足以识别土壤中存在的所有微生物种类。据估计,通过这种方法,只有约1%的细菌可以在培养基上培养,其余的细菌仍被隐藏在培养基中。另一方面,土壤宏基因组学是一个现代概念,它使我们能够识别这些隐藏的物种,而不需要在培养皿上培养细菌的偏见。在过去的二十年中,现代技术的快速发展本身不仅提高了人类识别土壤中这些微生物的能力,而且还提高了人类对土壤中这些微生物功能方面的理解。本文综述了现有的依赖培养的方法以及现代测序方法的出现和改进,有助于更详细地探索土壤微生物多样性。
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Next Generation Sequencing Approaches Deciphering Hidden Microbial Treasure in Soil
Soil is one of the most important and complex biological habitats on earth. As we know the microbes are important key players in every ecosystem, and biological and ecological processes. Thus, it is necessary to understand this microbial treasure to have information about their role in such processes. Initial culture dependent methods helped a lot but are insufficient to indentify all the microbial species present in the soil. It has been estimated that only ~1% of bacterial species are cultivable on culture medium and rest are still hidden in through such methods. On the other hands, soil metagenomics is a modern concept that allows us to recognize these hidden species without biasness of growing bacteria on to petri plates. In last two decades rapid improvements in modern techniques itself enhanced the human capabilities in not only identifying but also have an understanding of functional aspects of these microbes in soil. Present review describes the available culture dependent methods and emergence and improvement in modern sequencing approaches helping to explore soil microbial diversity of more detail.
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