系统基因组学包括新测序的两个飞蛾(夜蛾总科,飞蛾科)的有丝分裂基因组,显示Ischyja manlia (incertae sedis)是飞蛾亚科的成员。

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Genetica Pub Date : 2023-04-01 DOI:10.1007/s10709-023-00180-2
Muzafar Riyaz, Rauf Ahmad Shah, Savarimuthu Ignacimuthu, Kuppusamy Sivasankaran
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引用次数: 2

摘要

我们对两个黑蝇种Ischyja manlia (Cramer, 1776)和Rusicada privata (Walker, 1865)的有丝分裂基因组进行了测序,以分析系统发育关系并确定黑蝇科incertae sedis成员的分类地位。manlia和privata的两个圆形基因组长度分别为15,879 bp和15,563 bp。基因序列相同,包含13个蛋白编码基因(PCGs)、22个tRNA基因、2个rRNA基因和一个A + t富区。两种有丝分裂基因组的A + t富集区核苷酸组成相似,分别为80.65%和81.09%。AT偏态和GC偏态在褐花中呈微正态,在褐花中呈负态。在I. manlia和R. privata中,除cox1以CGA和TTG密码子开头外,其余12个PCGs均以ATN密码子开头。manlia和privata的A + t富区长度分别为433和476 bp,具有夜蛾科蛾类的共同特征。目前,Ischyja被视为鸢尾草(Erebinae intertae sedis)。然而,在本研究中进行的系统发育分析表明,Ischyja属最有可能是Erebinae亚科的成员。
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Phylogenomics including the newly sequenced mitogenomes of two moths (Noctuoidea, Erebidae) reveals Ischyja manlia (incertae sedis) as a member of subfamily Erebinae.

We sequenced the mitogenomes of two Erebid species, namely Ischyja manlia (Cramer, 1776) and Rusicada privata (Walker, 1865) to analyse the phylogenetic relationship and to establish the taxonomic position of incertae sedis members of the family Erebidae. The two circular genomes of I. manlia and R. privata were 15,879 bp and 15,563 bp long, respectively. The gene order was identical, containing 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an A + T-rich region. The nucleotide compositions of the A + T-rich region of both mitogenomes were similar: 80.65% for R. privata, and 81.09% for I. manlia. The AT skew and GC skew were slightly positive in I. manlia and negative in R. privata. In I. manlia and R. privata, except for cox1 which started with CGA and TTG codons, all the other 12 PCGs started with ATN codon. The A + T-rich regions of I. manlia and R. privata were 433 and 476 bp long, respectively, and contained common characteristics of Noctuoidea moths. At present, Ischyja is treated as Erebinae incertae sedis. However, phylogenetic analysis conducted in the present study reveals that the genus Ischyja is most likely to be a member of the subfamily Erebinae.

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来源期刊
Genetica
Genetica 生物-遗传学
CiteScore
2.70
自引率
0.00%
发文量
32
审稿时长
>12 weeks
期刊介绍: Genetica publishes papers dealing with genetics, genomics, and evolution. Our journal covers novel advances in the fields of genomics, conservation genetics, genotype-phenotype interactions, evo-devo, population and quantitative genetics, and biodiversity. Genetica publishes original research articles addressing novel conceptual, experimental, and theoretical issues in these areas, whatever the taxon considered. Biomedical papers and papers on breeding animal and plant genetics are not within the scope of Genetica, unless framed in an evolutionary context. Recent advances in genetics, genomics and evolution are also published in thematic issues and synthesis papers published by experts in the field.
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