通过高通量测序分析卵巢过度刺激综合征患者外周血转录组。

IF 0.7 4区 医学 Q4 OBSTETRICS & GYNECOLOGY Reproductive and Developmental Medicine Pub Date : 2023-06-01 DOI:10.1097/RD9.0000000000000058
Bo Yan, Bin Wu, Zhi-Qiang Wang, Yan Wei, Ya-Li Ni
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摘要

卵巢过度刺激综合征(OHSS)是辅助生殖过程中常见的医源性并发症,约占所有体外受精周期的30%。通过高通量测序,我们研究了OHSS患者的外周血转录组。方法:取卵当日抽取OHSS高危组和低危组各15例患者外周血标本。随后,采用高通量测序方法获得了来自高危组和低危组的5名患者的外周血转录组。利用生物信息学工具绘制mRNA表达谱,筛选差异表达基因(DEGs)。生物信息学技术还应用于京都基因基因组百科全书(KEGG)信号通路、基因本体(GO)功能和DEGs的蛋白-蛋白相互作用(PPI)网络分析。结果:共鉴定到20,031个基因,其中差异表达148个(P < 0.05, |log2FC| > 0.58),表达上调52个,表达下调96个。GO和KEGG分析表明,这些基因参与细胞外小体(GO: 0070062)、质膜(GO: 0005886)、细胞外区域(GO: 0005576)、免疫系统反应(GO: 0006955)、PI3K-Akt信号通路(hsa04151)、细胞粘附分子(CAMs, hsa04514)、局灶性粘附(hsa04510)以及补体和凝血级联反应(hsa04610)。PPI网络和实时荧光定量聚合酶链反应(qPCR)验证预测补体C3、血管性血液病因子和血管细胞粘附蛋白1蛋白与OHSS密切相关,可能作为未来OHSS研究的潜在生物标志物。结论:转录组分析揭示了外周血中几种与OHSS危险因素相关的deg,表明这些deg可能是OHSS发展的新参与者。
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Peripheral blood transcriptome analysis of patients with ovarian hyperstimulation syndrome through high-throughput sequencing.

Ovarian hyperstimulation syndrome (OHSS) is a frequent iatrogenic complication that arises during assisted reproduction and accounts for approximately 30% of all in vitro fertilization cycles. Using high-throughput sequencing, we investigated the peripheral blood transcriptome of patients with OHSS.

Methods: Peripheral blood samples were obtained from 15 patients in each of the OHSS high-risk and low-risk groups on the ovum pick-up day. Subsequently, high-throughput sequencing was used to obtain the peripheral blood transcriptomes of five patients each from the high- and low-risk groups. Bioinformatic tools were used for mRNA expression profile mapping and screening of differentially expressed genes (DEGs). Bioinformatics techniques were also implemented in the Kyoto Encyclopedia of Genes Genomes (KEGG) signal pathway, Gene Ontology (GO) function, and protein-protein interaction (PPI) network analyses of DEGs.

Results: A total of 20,031 genes were identified and 148 were found to be differentially expressed (P <0.05, |log2FC| > 0.58), with 52 upregulated and 96 downregulated genes. GO and KEGG analyses indicated that these genes were involved in extracellular corpuscles (GO: 0070062), plasma membrane (GO: 0005886), extracellular regions (GO: 0005576), immune system response (GO: 0006955), PI3K-Akt signaling pathways (hsa04151), cell adhesion molecules (CAMs, hsa04514), focal adhesion (hsa04510), and complement and coagulation cascades (hsa04610). The PPI network and realtime fluorescence quantitative polymerase chain reaction (qPCR) verification predicted that complement C3, von Willebrand factor, and vascular cell adhesion protein 1 proteins are highly implicated in OHSS and may serve as potential biomarkers for future OHSS studies.

Conclusion: Transcriptome analysis revealed several DEGs related to OHSS risk factors in the peripheral blood, indicating that these DEGs may be novel players in OHSS development.

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来源期刊
Reproductive and Developmental Medicine
Reproductive and Developmental Medicine OBSTETRICS & GYNECOLOGY-
CiteScore
1.60
自引率
12.50%
发文量
384
审稿时长
23 weeks
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