International Symposium on String Processing and Information Retrieval : SPIRE ... : proceedings. SPIRE (Symposium)

Prefix-free parsing for merging big BWTs.

Pub Date : 2026-01-01 DOI: 10.1007/978-3-032-05228-5_6 Diego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Lipták, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar

KeBaB: k-mer based breaking for finding long MEMs.

Pub Date : 2026-01-01 DOI: 10.1007/978-3-032-05228-5_2 Nathaniel K Brown, Lore Depuydt, Mohsen Zakeri, Anas Alhadi, Nour Allam, Dove Begleiter, Nithin Bharathi Kabilan Karpagavalli, Suchith Sridhar Khajjayam, Hamza Wahed, Travis Gagie, Ben Langmead

Data Structures for SMEM-Finding in the PBWT.

Pub Date : 2023-09-01 DOI: 10.1007/978-3-031-43980-3_8 Paola Bonizzoni, Christina Boucher, Davide Cozzi, Travis Gagie, Dominik Köppl, Massimiliano Rossi